Hi Greg, Our Galaxy version is galaxy-dist 7712:e6444e7a1685 . The tool is ³contra² from this repo: http://fcaramia@toolshed.g2.bx.psu.edu/repos/fcaramia/contra I own the repo and uploaded the tool_dependencies file Then the following steps: Installing the tool from toolshed: Success Installing tool dependencies: Failed Deleting tool: Success Re-installing tool: Failed Thanks, Franco On 4/12/12 12:40 AM, "Greg Von Kuster" <greg@bx.psu.edu> wrote:
Hello Franco,
It's impossible to help you with this issue and the issues you sent in your previous messages unless you provide more information. What version of Galaxy are you running? From what tool shed are you installing repositories. What repository are you installing? What are the precise steps you took to produce the behavior?
Keep in mind that the Galaxy test tool shed tracks the galaxy-central repository on bitbucket while the Galaxy main tool shed tracks the galaxy-dist repository on bitbucket.
Greg Von Kuster
On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote:
URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+o... +reinstall&id=88ee2d7021e4dc1a Module paste.exceptions.errormiddleware:143 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> environ, self.app) Module paste.wsgilib:539 in intercept_output
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> body = method( trans, **kwargs ) Module galaxy.web.framework:184 in decorator
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.reselect_tool_panel_section( trans, **kwd ) Module galaxy.web.framework:184 in decorator
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:1352 in reselect_tool_panel_section
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> status=status ) Module galaxy.web.framework:746 in fill_template
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.fill_template_mako( filename, **kwargs ) Module galaxy.web.framework:757 in fill_template_mako
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return template.render( **data ) Module mako.template:296 in render
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> callable_(context, *args, **kwargs) Module _base_mako:42 in render_body
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(next.body())) Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in render_body
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] ))) Module _admin_tool_shed_repository_common_mako:204 in render_render_tool_dependency_section
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> changeset_revision ) Module posixpath:67 in join
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> elif path == '' or path.endswith('/'): AttributeError: 'NoneType' object has no attribute 'endswith'
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