Hello Carlos,

The cause of the server error is a tool shed issue which I've corrected, so you should now be able to install the gmap repository.  I've installed the repository locally and it seems to be ok (althoug I haven't executed contained tools), but it's in a strange state in the tool shed probably because all of it's contents were deleted except the tool_dependencies.xml file in the repository tip:

Changeset 6adc485b6dc0
added:
tool_dependencies.xml
removed:
README
gmap.xml
gmap_build.xml
gsnap.xml
iit_store.xml
lib/galaxy/datatypes/gmap.py
snpindex.xml
tool-data/datatypes_conf.xml
tool-data/gmap_indices.loc.sample


You can contact the repository owner via the "Contact repository owner" option in the "Repository Actions" pop-up menu when viewing the repository.

Greg Von Kuster


On Oct 24, 2012, at 12:27 PM, Carlos Borroto wrote:

Hi,

I get a "HTTPError: HTTP Error 500: Internal Server Error"(see full
error trace below) when trying to install GMAP from the main toolshed.
Is there a way to report this to the tool authors?

Thanks,
Carlos

URL: http://galaxy.bfx.brel.local/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=4131098bea459833&changeset_revisions=561503a442f0
File '/local/opt/galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py',
line 364 in respond
 app_iter = self.application(environ, detect_start_response)
File '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py',
line 98 in __call__
 environ, self.app)
File '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py',
line 539 in intercept_output
 app_iter = application(environ, replacement_start_response)
File '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py',
line 80 in __call__
 return self.application(environ, start_response)
File '/local/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py',
line 91 in __call__
 return self.app( environ, start_response )
File '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
line 632 in __call__
 return self.application(environ, start_response)
File '/local/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py',
line 160 in __call__
 body = method( trans, **kwargs )
File '/local/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py',
line 205 in decorator
 return func( self, trans, *args, **kwargs )
File '/local/opt/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
line 1178 in prepare_for_install
 response = urllib2.urlopen( url )
File '/usr/lib64/python2.6/urllib2.py', line 126 in urlopen
 return _opener.open(url, data, timeout)
File '/usr/lib64/python2.6/urllib2.py', line 397 in open
 response = meth(req, response)
File '/usr/lib64/python2.6/urllib2.py', line 510 in http_response
 'http', request, response, code, msg, hdrs)
File '/usr/lib64/python2.6/urllib2.py', line 435 in error
 return self._call_chain(*args)
File '/usr/lib64/python2.6/urllib2.py', line 369 in _call_chain
 result = func(*args)
File '/usr/lib64/python2.6/urllib2.py', line 518 in http_error_default
 raise HTTPError(req.get_full_url(), code, msg, hdrs, fp)
HTTPError: HTTP Error 500: Internal Server Error
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