Hi Jocelyn,
are you referring to the Docker --net option?
https://docs.docker.com/engine/userguide/networking/dockernetworks/
If so you can change the --net option during container startup. For
example with
docker run --net=host -p 8080:80 bgruening/galaxy-stable
I'm wondering if there is not an other issue in your configuration
because Galaxy in Docker can connect to the internet without
problems.
Indeed all our flavours rely on the fact that you can install tools
from the ToolShed.
Docker containers can have problems with pause and resume on
Notebooks, so maybe a restart of your container fixes it?
Thanks for using Galaxy!
Bjoern
On 18.12.2015 13:59, Brayet Jocelyn
wrote:
Dear Galaxy team,
I'm Jocelyn Brayet, I’m a bioinformatician of
Institut Curie (France). I work with Alban Lermine on Galaxy
tools development.
I currently create tools in Docker for the
Galaxy Tool Shed. But, when Galaxy runs Docker, it adds the
"—net None" option.
The issue is that my tools require annotation
files that are downloaded when the job is running (only if
the annotation file is not yet available).
With "—net None" option I cannot download these
annotation files in a Docker.
I would like to know if there is a way to switch
off this "--net None" option, for instance through the
galaxy.ini file ?
If so, the user would have the choice to allow
Docker to download these files.
Many thanks for your feedbacks
Best regards
Jocelyn