OK, got it. Pulling galaxy-central now. Will let you know. Thanks, Prakash On Jan 3, 2014, at 12:22 PM, Martin Čech <marten@bx.psu.edu<mailto:marten@bx.psu.edu>> wrote: Prakash: not unless your default pull is galaxy-central repository. M. On Fri, Jan 3, 2014 at 11:49 AM, Velayutham, Prakash (Prakash) <Prakash.Velayutham@cchmc.org<mailto:Prakash.Velayutham@cchmc.org>> wrote: Hi Nate, If I do a "hg clone" of my default pull, this should already be there? Thanks, Prakash On Jan 3, 2014, at 11:45 AM, Nate Coraor <nate@bx.psu.edu<mailto:nate@bx.psu.edu>> wrote: Hi Prakash, This was not previously possible, but I have added a config option for it: https://bitbucket.org/galaxy/galaxy-central/commits/e92e13e9c103cc1f36dff65e... If you're running the stable branch, you can apply the changes from this commit manually. --nate On Thu, Jan 2, 2014 at 11:09 AM, Jennifer Jackson <jen@bx.psu.edu<mailto:jen@bx.psu.edu>> wrote: Hello Prakash, I am going to move this over to the galaxy-dev@bx.psu.edu<mailto:galaxy-dev@bx.psu.edu> mailing list where it will have greater visibility within our development community. Best, Jen Galaxy team https://wiki.galaxyproject.org/MailingLists#The_lists On 1/2/14 7:27 AM, Velayutham, Prakash (Prakash) wrote: Hi, We have a SSO environment provided by Oracle Fusion products and for some reason, they don't like to send over HTTP_REMOTE_USER as a header variable to downstream servers. I have seen it before with other web sites I have integrated with Oracle Access Manager. Is there a way Galaxy can accept another HEADER variable than REMOTE_USER for its external authentication? As an extension: * With just enabling HTTP_REMOTE_USER as a header variable from an external authenticator, Galaxy works without any issues. I tried this with a default Apache/mod_ldap/mod_authnz_ldap setup. * However, when I mix the Oracle gateways into the mix, things break down. * I made OAM send HTTP_AUTH_USER over to Galaxy. * I changed all instances of REMOTE_USER to AUTH_USER in the installed location of Galaxy in my server. * Authentication works fine, but I get issues with HISTORY part of Galaxy (below), when I access a workflow or basically any part of Galaxy that depends on HISTORY Error Traceback: View as: Interactive<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> | Text<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> | XML<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> (full)<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> ⇝ AttributeError: 'NoneType' object has no attribute 'user' URL: http://xxx.xxx.xxx/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False Module weberror.evalexception.middleware:364 in respond <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> app_iter = self.application(environ, detect_start_response) Module paste.recursive:84 in __call__ <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> return self.application(environ, start_response) Module galaxy.web.framework.middleware.remoteuser:91 in __call__ <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> return self.app( environ, start_response ) Module paste.httpexceptions:633 in __call__ <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> return self.application(environ, start_response) Module galaxy.web.framework.base:132 in __call__ <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:190 in handle_request <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> body = method( trans, **kwargs ) Module galaxy.web.framework:98 in decorator <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.dataset:555 in list <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> status, message = self._copy_datasets( trans, hda_ids, target_histories ) Module galaxy.webapps.galaxy.controllers.dataset:1127 in _copy_datasets <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> if user != history.user: AttributeError: 'NoneType' object has no attribute 'user'
Thanks, Prakash ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org<http://usegalaxy.org/>. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Jennifer Hillman-Jackson http://galaxyproject.org<http://galaxyproject.org/> ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/