Hi Liisa,
This is a bug in setting up chromosome information for jobs and is actually due to some unusual interactions b/t your custom builds and job setup. I've fixed it in -central changeset a8eca62cd530 ; of course, this will be available during the next -dist update.
Best,
J.
Hi,
I have tried running (on my local instance)
a number of tools (fasta_to_tabular, tandem_repeat_finder, others)
on my fasta file but keep getting the error Error
executing tool: 'fasta' after file execution. In the log file I see
this
10.1.1.119 - - [27/Jan/2012:15:47:15 -0400]
"GET /tool_runner?tool_id=fasta2tab HTTP/1.1" 200 - "http://domain:8080/root/tool_menu"
"Mozilla/5.0 (Windows NT 5.2; WOW64; rv:6.0) Gecko/20100101 Firefox/6.0"
galaxy.tools ERROR 2012-01-27 15:47:17,647
Exception caught while attempting tool execution:
Traceback (most recent call last):
File "/Galaxy/galaxy_dist/lib/galaxy/tools/__init__.py",
line 1184, in handle_input
_, out_data = self.execute(
trans, incoming=params, history=history )
File "/Galaxy/galaxy_dist/lib/galaxy/tools/__init__.py",
line 1503, in execute
return self.tool_action.execute(
self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history,
**kwargs )
File "/Galaxy/galaxy_dist/lib/galaxy/tools/actions/__init__.py",
line 199, in execute
build_fasta_dataset = trans.app.model.HistoryDatasetAssociation.get(
custom_build_dict[ 'fasta' ] )
KeyError: 'fasta'
The fasta file is ok because I have
a development installation and the tools work fine there. So there is something
wrong with my production installation.
I did a diff between the files galaxy_dist/lib/galaxy/tools/__init__.py
and lib/galaxy/tools/actions/__init__.py
but they are the same.
Any help would be much appreciated.
Thanks,
Liisa___________________________________________________________
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