details: http://www.bx.psu.edu/hg/galaxy/rev/248627e7bd58 changeset: 1553:248627e7bd58 user: Greg Von Kuster greg@bx.psu.edu date: Mon Oct 13 14:55:13 2008 -0400 description: Fix for data_source tool params sent in the post from the remote data source.
1 file(s) affected in this change:
lib/galaxy/tools/__init__.py
diffs (33 lines):
diff -r 4b9feffc3ce5 -r 248627e7bd58 lib/galaxy/tools/__init__.py --- a/lib/galaxy/tools/__init__.py Thu Oct 09 11:23:33 2008 -0400 +++ b/lib/galaxy/tools/__init__.py Mon Oct 13 14:55:13 2008 -0400 @@ -1134,10 +1134,11 @@ if self.tool_type == 'data_source': # List for converting UCSC to Galaxy exts, if not in following dictionary, use provided datatype data_type_to_ext = { 'wigdata':'wig', 'tab':'interval', 'hyperlinks':'html', 'sequence':'fasta' } - dbkey = param_dict.get( 'dbkey ' ) + dbkey = param_dict.get( 'dbkey' ) organism = param_dict.get( 'organism' ) table = param_dict.get( 'table' ) description = param_dict.get( 'description' ) + info = param_dict.get( 'info' ) if description == 'range': description = param_dict.get( 'position', '' ) if not description: @@ -1147,6 +1148,7 @@ for name, data in items: if organism and table and description: data.name = '%s on %s: %s (%s)' % ( data.name, organism, table, description ) + data.info = info data.dbkey = dbkey ext = data_type try: @@ -1169,7 +1171,7 @@ # tag set in the tool config. if self.tool_type == 'data_source': name, data = out_data.items()[0] - if data.state == data.states.OK: + if data.state == data.states.OK and not data.info: data.info = data.name if not isinstance( data.datatype, datatypes.interval.Bed ) and isinstance( data.datatype, datatypes.interval.Interval ): data.set_meta()