On May 28, 2010, at 2:58 PM, Nate Coraor wrote:
Davide Cittaro wrote:
use_printdebug = False
Ah, that was going to be my first question. I suggest just use_debug = False.
solves the memory issue (at least doesn't call paste.PrintDebugMiddleware which calls paste.intercept_output....) BTW, still not able to see BAM files... well, actually I can see the reads at the beginning of chromosome 10, which are the reads at the beginning of my BAM file :-(
I've asked to open the galaxy test server to the UCSC in California... Still get truncated BAM files, at the beginning of chr10... What is nice is that files are truncated in a different manner on our mirror, like it can read some more information before end of communication... Unfortunately there's no log about this "truncation" error... :-( d
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/* Davide Cittaro Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it */