On Mon, Nov 4, 2013 at 10:33 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
More "missing test results", yet listed under "Latest revision: failing tool tests":
http://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id
The common feature is they all depend on Biopython - perhaps that failed to install, and the tests were skipped?
I updated all three of these tools (and others) on the Test Tool Shed yesterday to address my misconfigured dependencies (thanks Greg!), e.g. https://github.com/peterjc/pico_galaxy/commit/399111894d1ea9432a4c24ed041369... (Note that other tools with the same broken dependency setup did not suffer from the "missing test output" problem - they were showing the tool's test failures) The good news is that seq_select_by_id has gone from an apparent failure with missing test output, to a passing test: http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id/bedfe8f3d3fb The bad news is there are still 2 apparently failing tests with missing test output: http://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss/09b5b1af9b8f http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip/42bca649ec44 Similarly over on the Main Tool Shed (where I have not yet updated these two tools). Regards, Peter