On Tue, Aug 12, 2014 at 3:13 PM, Tony Kusalik <kusalik@cs.usask.ca> wrote:

Hi,

I installed the latest set of changes to Galaxy, and now the Galaxy server will not start up. I am hoping someone can point me to the source of the problem and/or a fix.

This morning my Galaxy server was running just fine. I did a
hg incoming
and was told that a fair number of changes were waiting to be applied,
changeset 13772 through changeset 14309. Fine. I did
hg pull -u
and got
searching for changes
adding changesets
adding manifests
adding file changes
added 538 changesets with 1738 changes to 542 files
473 files updated, 0 files merged, 152 files removed, 0 files unresolved
Fine.
However, now my Galaxy server will not start up and run. On
sh run.sh --daemon
the server dies with the following produced in paster.log
where /birl2/Galaxy/galaxy-dist is the name of the installation
directory.

-- begin paster.log --

Traceback (most recent call last):
File "./scripts/paster.py", line 33, in <module>
serve.run()
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 10
49, in run
invoke(command, command_name, options, args[1:])
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 10
55, in invoke
exit_code = runner.run(args)
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 22
0, in run
result = self.command()
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 64
3, in command
app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars)
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
350, in loadapp
return loadobj(APP, uri, name=name, **kw)
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
374, in loadobj
global_conf=global_conf)
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
399, in loadcontext
global_conf=global_conf)
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
423, in _loadconfig
return loader.get_context(object_type, name, global_conf)
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
561, in get_context
section)
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
620, in _context_from_explicit
value = import_string(found_expr)
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line
125, in import_string
return pkg_resources.EntryPoint.parse("x=" + s).load(False)
File "/birl2/Galaxy/galaxy-dist/lib/pkg_resources.py", line 1954, in load
entry = __import__(self.module_name, globals(),globals(), ['__name__'])
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/web/__init__.py", line 4, in <modul
e>
from framework import expose
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py", line 48
, in <module>
eggs.require( "amqp" )
File "/birl2/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 414, in req
uire
raise EggNotFetchable( str( [ egg.name for egg in e.eggs ] ) )
galaxy.eggs.EggNotFetchable: ['amqp']
Removing PID file paster.pid

-- end paster.log --

The above is the complete content of paster.log.

Anyone have any idea what the problem is? More importantly, how do I fix the problem
and get Galaxy running again?

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