Hi Alexander,

If this wasn't a collection, I would expect  format_source to work
(possibly also using metadata_source="fastq_input1"), so perhaps
this is a bug - John?

Peter

P.S. Your help caption and output label both say FASTQ, but the
input also allows FASTA input. Typo?

On Thu, Jun 25, 2015 at 2:39 AM, Alexander Vowinkel
<vowinkel.alexander@gmail.com> wrote:
> Hi,
>
> I have an input, that can be fasta,fastqsanger,fastqillumina:
>
> <param name="fastq_input1" type="data"
> format="fasta,fastqsanger,fastqillumina" label="Select the fastq file"
> help="Specify fastq file with reads"/>
>
>
> I have multiple outputfiles - bundled in a list collection:
>
> <collection name="split_output" type="list" label="@OUTPUT_NAME_PREFIX@ on
> ${on_string} (Fastq Collection)" format_source="fastq_input1">
>     <discover_datasets pattern="__name_and_ext__" directory="splits" />
> </collection>
>
>
> The format_source parameter doesn't work - the files in the list (extension
> fq) are of format "fq"
>
> How can I make it possible that they are fasta,fastqsanger,fastqillumina
> depending on fastq_input1?
>
> Thanks,
> Alexander
>

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