I was trying to track down why an attempt to test my tool is eventually failing with: "ValueError: No such test TestForTool_ffp_phylogeny" In my case the tool code is located in a Galaxy's tool shed folder, so I'm guessing that might have something to do with it? Has someone come up with a thorough checklist on issues around this? Tool xml file header: <tool id="ffp_phylogeny" name="Feature Frequency Profile Phylogeny" version="0.1.00"> Using John Chilton's ready made sqlite db (though our live server uses a postgres one)
export GALAXY_TEST_DB_TEMPLATE=tmp/db_gx_rev_0120.sqlite
Command line (recent Update tag latest_2015.01.13 for changeset 0cb6cec4ee57):
run_tests.sh -id ffp_phylogeny
begins the process alright. *********************************** My galaxy-dist/tool_shed.xml.sample where I understand references to the tool are supposed to go (and I confirmed the tool file absolute path): <?xml version="1.0"?> <toolbox tool_path="../shed_tools"> <section id="bccdc_tools" name="BCCDC Tools" version=""> <tool file="/usr/local/galaxy/production1/shed_tools/salk.bccdc.med.ubc.ca/toolshed/repos/ddooley/ffp_phylogeny/eb1924fbd3ba/ffp_phylogeny/ffp_phylogeny.xml" guid="salk.bccdc.med.ubc.ca/toolshed/repos/ddooley/ffp_phylogeny/ffp_phylogeny/0.1.00"> <tool_shed>salk.bccdc.med.ubc.ca/toolshed</tool_shed> <repository_name>ffp_phylogeny</repository_name> <repository_owner>ddooley</repository_owner> <installed_changeset_revision>eb1924fbd3ba</installed_changeset_revision> <id>salk.bccdc.med.ubc.ca/toolshed/repos/ddooley/ffp_phylogeny/ffp_phylogeny/0.1.00</id> <version>0.1.00</version> </tool> <tool file="salk.bccdc.med.ubc.ca/toolshed/repos/damion/versioned_data/e9ebe2959300/versioned_data/versioned_data.xml" guid="salk.bccdc.med.ubc.ca/toolshed/repos/damion/versioned_data/versioned_data/0.1.00"> <tool_shed>salk.bccdc.med.ubc.ca/toolshed</tool_shed> <repository_name>versioned_data</repository_name> <repository_owner>damion</repository_owner> <installed_changeset_revision>e9ebe2959300</installed_changeset_revision> <id>salk.bccdc.med.ubc.ca/toolshed/repos/damion/versioned_data/versioned_data/0.1.00</id> <version>0.1.00</version> </tool> </toolbox> Thanks for any pointers! Soon as tests fly, I'll be contributing the tools up to the test tooshed. Regards, Damion Hsiao lab, BC Public Health Microbiology & Reference Laboratory, BC Centre for Disease Control 655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada