Hi,
I try to configure Galaxy with SGE. It works one time yesterday but now I have the following message all the time :
galaxy.jobs DEBUG 2011-07-26 16:50:54,002 dispatching job 118 to drmaa runner
galaxy.jobs ERROR 2011-07-26 16:50:54,002 put(): (118) Invalid job runner: drmaa
[ An error occurred running this job: Unable to run job due to a misconfiguration of the Galaxy job running system. Please contact a site administrator. ] On the web page.
Here is my universe_wsgi.ini file :
[server:main]
port = 8000
host = X.X.X.X
use_threadpool = True
[filter:proxy-prefix]
prefix = /galaxy
[app:main]
paste.app_factory = galaxy.web.buildapp:app_factory
filter-with = proxy-prefix
database_connection = mysql://galaxy:xxxxxx@localhost:3306/galaxy?unix_socket=/var/run/mysqld/mysqld.sock
file_path = database/files
new_file_path = database/tmp
job_working_directory = database/users_space/user_galaxy
cluster_files_directory = database/users_space/user_galaxy
use_nglims = False
nglims_config_file = tool-data/nglims.yaml
static_enabled = True
static_cache_time = 360
static_dir = %(here)s/static/
static_images_dir = %(here)s/static/images
static_favicon_dir = %(here)s/static/favicon.ico
static_scripts_dir = %(here)s/static/scripts/
static_style_dir = %(here)s/static/june_2007_style/blue
log_events = True
log_actions = True
debug = True
use_interactive = True
library_import_dir = /home/galaxy/galaxy-dist/tmpdir
user_library_import_dir = True
allow_library_path_paste = True
admin_users = me@...
enable_pages = True
enable_api = True
set_metadata_externally = True
retry_metadata_internally = True
outputs_to_working_directory = True
start_job_runners = drmaa
default_cluster_job_runner = drmaa:///
[galaxy:tool_runners]
biomart = local:///
encode_db1 = local:///
hbvar = local:///
microbial_import1 = local:///
ucsc_table_direct1 = local:///
ucsc_table_direct_archaea1 = local:///
ucsc_table_direct_test1 = local:///
upload1 = local:///
[galaxy_amqp]
I checked many things, but it did not change anything...
Any help would gracefull.
Regards.