I tried with many data but still the same problem and regarding settings I haven't changed a thing of Tophat2. What might be causing this error? Thanks On Wed, Feb 13, 2013 at 7:10 PM, Jeremy Goecks <jeremy.goecks@emory.edu>wrote:
If the other outputs are fine, then the problem is likely with your data and/or your Tophat settings.
Good luck, J.
On Feb 13, 2013, at 8:22 AM, Sachit Adhikari wrote:
Ok sorry. I did that, but the output of splice junctions is empty. The other outputs looks fine. What might be the problem?
Thanks,
Sachit
On Wed, Feb 13, 2013 at 1:20 PM, Jeremy Goecks <jeremy.goecks@emory.edu>wrote:
Shall I replace:
/orig/path/hg19 hg19 hg19 /depot/data2/galaxy/bowtie2/hg19/hg19
with
hg19 hg19 hg19 Homo_sapiens/UCSC/hg19/Sequence/Bowtie2Index
Yes, that's correct.
Finally, please email only galaxy-dev with questions about local installations; galaxy-user is for questions about how to use Galaxy.
Best, J.