Thanks! Super useful!

Cheers,

Christopher

See also:

https://galaxyproject.github.io/training-material/topics/admin/tutorials/monitoring-maintenance/slides.html

Cheers,
Nicola

On 27/04/18 15:05, Hans-Rudolf Hotz wrote:

Hi Christopher


It depends on the setting of "cleanup_job" ('always', 'onsuccess', 'never'), whether the temporary files are cleaned up or not. Though, to be honest, I don't know, if this setting as any influence, when you 'delete' a job.

For the quotas, only dataset in the histories are counted

The temporary files are very handy for debugging, so I have 'onsuccess' on our production server and 'never' on our development server. I just regularly check the total size of the working directories and do the clean up manually


Regards, Hans-Rudolf




On 04/27/2018 01:51 PM, Previti wrote:

Hi everybody,

I have a hopefully basic questions regarding temporary output files.

A user was generating >4TB output files via the program bedtools
intersectbed. The jobs were cancelled, but I still see the (temporary)
output files that were generated.

Does Galaxy clean these up? Does it do this regularly?

Would a quota prevent something like this from happening again or would
the jobs have to finish before being "counted"?

Thanks and best regards,

Christopher

-- 
*Dr. Christopher Previti*
Genomics and Proteomics Core Facility
High Throughput Sequencing (W190)
Bioinformatician

German Cancer Research Center (DKFZ)
Foundation under Public Law
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Germany
Room: B2.102 (INF580/TP3)
Phone: +49 6221 42-4661

christopher.previti@dkfz.de <http://www.dkfz.de/>
www.dkfz.de <http://www.dkfz.de/>

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