Hi Martin, I will try and figure out where I came across the page (it may have been from Google). I am having trouble installing: BEAM, LPS, PASS, and GPASS. Conda cannot find any sources to install these packages. Thank you! Tom From: Martin Čech <marten@bx.psu.edu> Sent: Monday, July 16, 2018 12:42 PM To: Tom Misilo <misilot@fit.edu> Cc: galaxy-dev@bx.psu.edu Subject: Re: [galaxy-dev] Installing Tool Dependencies Hello Tom, that page is very very outdated and I wouldn't trust it. Do you have any specific tools from that list that are giving you trouble? If not then I would ignore it completely. Majority of the tools are now installed through the Toolshed and dependencies are auto-managed by Galaxy's own Conda which should provide a much better experience. Martin p.s. from what page did you get to this list? On Mon, Jul 16, 2018 at 12:06 PM Tom Misilo <misilot@fit.edu<mailto:misilot@fit.edu>> wrote: Hello, I am trying to help a research here at Florida Tech setup Galaxy locally to process their data. However, I am running into a problem installing some tool dependencies was on this page (https://moin.galaxyproject.org/Admin/Tools/ToolDependencies). For example, I am trying to install BEAM, LPS, PASS, and GPASS. However, I cannot find in the documentation for either the tools themselves or on Galaxy on how to set these tools up for use in Galaxy. Would you be able to assist in this matter? Thank you! Tom Thomas Misilo Network Engineer Florida Institute of Technology Evans Library 150 W. University Blvd Melbourne, FL 32901 Phone: 321-674-8831<tel:(321)%20674-8831> Fax: 321-724-2559<tel:(321)%20724-2559> misilot@fit.edu<mailto:misilot@fit.edu> ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/