Hello,

I have tried to couple our GALAXY-server (unified, running on a virtual server, ubuntu 12) with our big SGI Cluster-Server uv100 running PBSpro as job system

(pbs_version = PBSPro_11.1.1.112253).

On the GALAXY-server I have installed

ii  pbs-drmaa-dev                        1.0.10-2                       DRMAA for Torque/PBS Pro - devel
ii  pbs-drmaa1                           1.0.10-2                       DRMAA for Torque/PBS Pro - runtime

We have the GALAXY-sources installed very recently; job-creation is prepared, but no job is scheduled to our uv100.

Did you ever hear that the libdrmaa.so coming with this package is useful to couple to a PBSpro-server?

The DRMAA_LIBRARY_PATH  has been set accordingly to  /usr/lib/libdrmaa.so.1.0.10 .

we set
default_cluster_job_runner = drmaa://uv100.awi.de/slong/

We also checked that the torque-system on the GALAXY-Server could successfully submit jobs by "qsub" on the PBSpro-server in the slong queue.

Best regards and many thanks in advance,

S. Frickenhaus

--

--

Prof. Dr. Stephan Frickenhaus

Hochschule Bremerhaven

An der Karlstadt 8

27568 Bremerhaven

0471-4823-525

0151-1741 1631

Alfred-Wegener-Institut f. Polar- u. Meeresforschung

Am Handelshafen 12

27570 Bremerhaven

stephan.frickenhaus@awi.de

0471-4831-1179  0151-1741 1631

--

Prof. Dr. Stephan Frickenhaus

FB1 - Biotechnologie

 Hochschule Bremerhaven

An der Karlstadt 8

27568 Bremerhaven

0471-4823-525

0151-1741 1631

Alfred-Wegener-Institut f. Polar- u. Meeresforschung

Bioinformatik/Rechenzentrum

Am Handelshafen 12

27570 Bremerhaven

stephan.frickenhaus@awi.de

0471-4831-1179

0151-1741 1631