Hi,

I have updated Galaxy today with the latest changes.

While trying to upload a file from the system path without copying to Galaxy I am getting the following Server error:

AttributeError: 'ScopedSession' object has no attribute 'data'

The full message is below.

This does not occur if the file is copied in to galaxy.

I have made local changes to a few of the upload files to support an additional binary file type, but I can't see how these would affect upload from system path.

Is any one else having a similar issue?

Any help would be appreciated

Thanks

Shaun Webb

URL: http://bifx3.bio.ed.ac.uk:8080/library_admin/upload_library_dataset

Module paste.exceptions.errormiddleware:143 in __call__

 app_iter = self.application(environ, start_response)

Module paste.debug.prints:98 in __call__

 environ, self.app)

Module paste.wsgilib:539 in intercept_output

 app_iter = application(environ, replacement_start_response)

Module paste.recursive:80 in __call__

 return self.application(environ, start_response)

Module paste.httpexceptions:632 in __call__

 return self.application(environ, start_response)

Module galaxy.web.framework.base:125 in __call__

 body = self.call_body_method( method, trans, kwargs )

Module galaxy.web.framework.base:144 in call_body_method

 return method( trans, **kwargs )

Module galaxy.web.framework:87 in decorator

 return func( self, trans, *args, **kwargs )

Module galaxy.web.controllers.library_admin:712 in upload_library_dataset

 **kwd )

Module galaxy.web.controllers.library_common:87 in upload_dataset

 uploaded_datasets, err_redirect, msg = self.get_path_paste_uploaded_datasets( trans, params, library_bunch, err_redirect, msg )

Module galaxy.web.controllers.library_common:171 in get_path_paste_uploaded_datasets

 uploaded_datasets.append( self.make_library_uploaded_dataset( trans, params, name, path, 'path_paste', library_bunch ) )

Module galaxy.web.controllers.library_common:121 in make_library_uploaded_dataset

 trans.sa_session.data.flush()

AttributeError: 'ScopedSession' object has no attribute 'data'

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