Hi Matthiew, Can you clarify the version of Galaxy you are using? What is the result of typing "hg heads" in your Galaxy installation directory? ALso, I noticed the following in your paster log: ---------------------------------------- 131.254.16.26 - - [12/Nov/2012:10:52:26 +0200] "GET /admin_toolshed/browse_repositories HTTP/1.1" 500 - "http://dev-galaxy.genouest.org/admin" "Mozilla/5.0 (X11; Linux x86_64; rv:12.0) Gecko/20100101 Firefox/12.0" Debug at: http://dev-galaxy.genouest.org/_debug/view/1352713905 Directing your browser to the URL in the "Debug at" address will provide a stack trace of the exception thrown due to the problem. What is this this complete stack trace? Thanks, Greg Von Kuster On Nov 12, 2012, at 4:56 AM, Mathieu Bahin wrote:
And here is the paster...
De: "Mathieu Bahin" <mathieu.bahin@irisa.fr> À: "Greg Von Kuster" <greg@bx.psu.edu> Cc: galaxy-dev@bx.psu.edu Envoyé: Lundi 12 Novembre 2012 10:54:21 Objet: Re: [galaxy-dev] Bug report : JSONDecodeError
Hi Greg !
Thanks for the quick answer.
I am using the 7720 parent version but I keep it up-to-date without any problems. Enclosed you'll find the 'paster.log' file generated when I start Galaxy and try to access the manage installed tool shed repositories page.
Cheers, Mathieu Bahin
De: "Greg Von Kuster" <greg@bx.psu.edu> À: "Mathieu Bahin" <mathieu.bahin@irisa.fr> Cc: galaxy-dev@bx.psu.edu Envoyé: Vendredi 9 Novembre 2012 19:28:09 Objet: Re: [galaxy-dev] Bug report : JSONDecodeError
Hello Mathieu,
What version of Galaxy are you running? Also, I cannot read the stack trace from your pasted image, so can you send a text version of the complete stack trace from your paster log?
Thanks,
Greg Von Kuster
On Nov 9, 2012, at 11:26 AM, Mathieu Bahin wrote:
Hi,
I am using my own Galaxy instance and I had a problem removing a tool from the tool shed : mothur. The installation was ok and I the mothur tool running without any problem. But when I tried to uninstall the tool, I get an error (screenshot enclosed). And I get the same every time I try to go on the 'Manage tool shed repositories' in the Admin panel.
I have tried to rebuilt the eggs and to restart Galaxy basically. Actually, I don't really understand the error message.
Cheers, Mathieu Bahin <07.png>___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
<paster.log>