Jean-Francois, Are you running a current revision of Galaxy? This issue should be resolved in recent galaxy releases. -Dannon On Fri, Apr 19, 2013 at 3:47 PM, Jean-Francois Payotte < jean-francois.payotte@dnalandmarks.ca> wrote:
Dear Galaxy mailing list,
We ran into the same issue described in this post: http://dev.list.galaxyproject.org/markupsafe-module-conflicts-tc4656214.html The exact error message we are getting, with a few different tools is:
/Galaxy/galaxy_dist/lib/galaxy/__init__.py:79: UserWarning: Module markupsafe was already imported from /usr/lib64/python2.6/site-packages/markupsafe/__init__.pyc, but /Galaxy/galaxy_dist/eggs/MarkupSafe-0.12-py2.6-linux-x86_64-ucs4.egg is being added to sys.path self.check_version_conflict()
From the solution given in the above-mentioned post, I guess we would have to run Galaxy inside virtualenv. (Details of the procedure to install virtualenv, are given here: http://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer)
However, I am not sure to understand completely how it works. Can we use our already existing Galaxy instance with virtualenv? And how can we achieve this?
For the installation of "virtualenv" part, I think we are ok. It is the next step: how to tell Galaxy to run in this virtualenv, that I am not sure about.
Thank you in advance for your help!
*Jean-Francois* ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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