On Fri Jan 23 2015 at 8:36:44 AM Lukasse, Pieter <pieter.lukasse@wur.nl> wrote:

Hi Greg,

I would like to deploy my custom controller together with my tool via toolshed. Is there already a way to do this? What should I add to my tool_dependencies.xml?

I tried something like :

<action type="shell_command">

cd $GALAXY_HOME;

wget http://toolshed.g2.bx.psu.edu/repos/pieterlukasse/nist_wrapper/raw-file/tip/nist_controller.py;

</action>

But I’m glad this apparently didn’t work ;)

Thanks,

Pieter

From: galaxy-dev [mailto:galaxy-dev-bounces@lists.galaxyproject.org] On Behalf Of Lukasse, Pieter
Sent: vrijdag 9 januari 2015 16:10
To: 'galaxy-dev@lists.galaxyproject.org'
Subject: [galaxy-dev] FW: Adding a new web-service or perhaps a "webapp" to Galaxy

Meanwhile I added a new file indeed to <galaxy-dist>/lib/galaxy/webapps/galaxy/controllers/

and this works for me. If there is a better/easier/standard way of doing this, please let me know!

Attached my file as example.

Best regards,

Pieter

From: galaxy-dev [mailto:galaxy-dev-bounces@lists.galaxyproject.org] On Behalf Of Lukasse, Pieter
Sent: vrijdag 9 januari 2015 13:55
To: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Adding a new web-service or perhaps a "webapp" to Galaxy

I could add a new file to

<galaxy-dist>/lib/galaxy/webapps/galaxy/controllers/

...is that a good way to do it?

From: galaxy-dev [mailto:galaxy-dev-bounces@lists.galaxyproject.org] On Behalf Of Lukasse, Pieter
Sent: vrijdag 9 januari 2015 13:28
To: galaxy-dev@lists.bx.psu.edu
Subject: [galaxy-dev] Adding a new web-service or perhaps a "webapp" to Galaxy

Hi,

In one of my tools I generate a HTML report which I would like to enhance with some ajax functionality. I would like the possibility to do some backend computations based on the ajax requests.

My question is: is there an easy way to add a new web-service to my Galaxy server? The web-service implementation would be in python. Ideally I would like to be able to ship this python file together with my tool via tool shed (and when installing from toolshed, the necessary configurations are applied to the server to enable this python code as a local web-service on the respective Galaxy server).

Thanks!

Pieter Lukasse

Wageningen UR, Plant Research International

Department of Bioinformatics (Bioscience)

Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
Wageningen, the Netherlands

T: +31-317481122;
M: +31-628189540;
skype: pieter.lukasse.wur

http://www.pri.wur.nl

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