Hi Björn, It should be fixed, the problem was with tools with uppercase characters in the guid: https://bitbucket.org/galaxy/galaxy-central/commits/0b955e54451c/ --nate On Thu, Feb 13, 2014 at 2:38 AM, Björn Grüning <bjoern.gruening@gmail.com>wrote:
Hi Nate & Simon,
was that solved? I think it's still not working? Or is that a regression. In particular shed_host/repos/owner/repo/tool_id is not working, and that is what is 90% needed, or?
Thanks, Bjoern
From: Nate Coraor [mailto:nate@bx.psu.edu]
This should work, it looks like there may be a bug with handling tool shed IDs when determining job destinations. You are actually supposed to be able to use any of:
shed_host/repos/owner/repo/tool_id/version shed_host/repos/owner/repo/tool_id tool_id
I'll take a look at this as soon as possible. One thing you might try in the short term is using the percent encoded tool id in the <tool> tag in job_conf.xml:
Hi Nate,
Using the percent encoded form was the first thing I tried (before emailing the list). It didn't make any difference. I think there's another reason it's not picking it up. Thanks for looking into this.
cheers, Simon
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