Peter, I believe this was again due to the installation of an earlier repository hanging until the testing framework canceled the build. I've added the repository in question to the exclude list, and hopefully your blast repositories will be properly tested within the next few hours. --Dave B. On 8/16/13 04:51:34.000, Peter Cock wrote:
On Wed, Aug 14, 2013 at 2:25 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Wed, Aug 14, 2013 at 11:56 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
Hi Greg,
I'm hoping you (or Dave) can throw a little light on why the NCBI BLAST+ nightly tests are not working again yet:
...
Sadly the (Test) Tool Shed isn't showing me any install logs, so I am hoping *you* have access to them.
...
However, I'm going back to the binary download route... it just seems like a more robust & reproducible solution all round:
http://testtoolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_26/c85236c...
This seems to work OK for 64 bit Linux, but once again, fingers crossed for the next nightly Tool Shed tests...
The new package_blast_plus_2_2_26 binary installer seems to be working for me and Bjoern, but the Test Tool Shed tests for ncbi_blastn_wrapper are still failing, e.g.
Fatal error: Exit code 127 () /bin/sh: 1: blastn: not found /bin/sh: 1: blastn: not found
Could you access the Test Tool Shed logs for this please to help track us down what is going wrong?
Thanks,
Peter