Hi,

I have added a few tools in the galaxy.For one of these tools it sometime gives an error.
but everytime I execute this tool it renders this exception on console.

Can anybody please help me fix it.

galaxy.jobs DEBUG 2010-05-21 14:30:03,166 dispatching job 203 to sge runner
galaxy.jobs.runners.sge ERROR 2010-05-21 14:30:03,508 failure running job 203
Traceback (most recent call last):
  File "/export/home/galaxy/galaxy-dist/lib/galaxy/jobs/runners/sge.py", line 120, in queue_job
    job_wrapper.prepare()
  File "/export/home/galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py", line 390, in prepare
    self.command_line = self.tool.build_command_line( param_dict )
  File "/export/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py", line 1343, in build_command_line
    command_line = fill_template( self.command, context=param_dict )
  File "/export/home/galaxy/galaxy-dist/lib/galaxy/util/template.py", line 9, in fill_template
    return str( Template( source=template_text, searchList=[context] ) )
  File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Template.py", line 1244, in __init__
    self._compile(source, file, compilerSettings=compilerSettings)
  File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Template.py", line 1538, in _compile
    keepRefToGeneratedCode=True)
  File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Template.py", line 745, in compile
    compiler.compile()
  File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Compiler.py", line 1670, in compile
    self._parser.parse()
  File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Parser.py", line 1488, in parse
    self.eatDirective()
  File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Parser.py", line 1610, in eatDirective
    directiveParser()
  File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Parser.py", line 1755, in eatEndDirective
    raise ParseError(self, msg='Invalid end directive')
ParseError:

Invalid end directive
Line 3, column 6

Line|Cheetah Code
----|-------------------------------------------------------------
2   |    #else: #gkelvin $confile.nonmeta
3   |    #end
          ^
4   |  

galaxy.jobs DEBUG 2010-05-21 14:30:03,509 job 203 dispatched


Regards,
Amit Modi

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