Hi Akshay,

I don't know the answer to your question.  So:

1) I went to http://galaxyproject.org/search/web/ and searched for "timeout" and then "timeout workflow."  There are lots of email threads (and I learned some stuff :-), but I didn't find a direct answer to your question.

2) I'm sending your question to the galaxy-dev list where it will be seen by hundreds of galaxy admins and tool developers.  (And this thread will also be found by any future searches.) 

Thanks,

Dave C

On Thu, Nov 15, 2012 at 8:33 AM, <akshaychoche@gmail.com> wrote:
Hello,

My name is Akshay and I am a computer science graduate student at UGA in Dr. Kissinger's Lab. We have created an extension to galaxy which allowed users to add web services as tools into galaxy, these could be either used as stand-alone or in a workflow. I wanted to know if Galaxy employs any time out strategy.

Consider a case where I have a workflow with BLASTP now it takes some time to run blast and then get result form it. When I try that experiment as standalone (i.e., running the run method first and then after several mins getting result using job id works) however when I create a workflow in which one tool being run method of blast followed by getresult, galaxy seems to time out.

Would appreciate your feedback on the same.

-Akshay Choche
Graduate Research Assistant (Kissinger Research Group)
Center for Tropical and Emerging Global Diseases
The University of Georgia,
Athens, GA - 30605
Tele: 256-520-6541
Email: achoche@uga.edu, akshaychoche@gmail.com
http://www.cs.uga.edu/~choche



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