Hi DK,

Looking at your XML that looks OK.

It might not be important, but how exactly are you running planemo

test?

I'm asking because currently it will not create tool-data/twobit.loc

for you from your sample file - although in that case I would have

expected a different error message:

https://github.com/galaxyproject/planemo/issues/530

https://github.com/galaxyproject/planemo/issues/530

Is planemo lint happy with your tool?

Peter

On Thu, Oct 6, 2016 at 11:08 PM, D K <danielfortin86@gmail.com> wrote:

Hi galaxy-dev,

I'm having a problem running a test using planemo where I would like the value of a parameter taken from one of the data tables. I get the following error in planemo:

'Error creating a job for these tool inputs - Parameter refGenomeSource_type requires a value, but has no legal values defined.\n

From my script XML:

 <param name="refGenomeSource_type" type="select" label="Select a reference genome / transcriptome">
      <options from_data_table="type_indexes">
      </options>
</param>
...
  <tests>
      <test>
        <param name="refGenomeSource_type" value="hsapiens"/>
     </test>
  </tests>

From my "tool_data_table_conf.xml.sample" and "tool_data_table_conf.xml.test" (mirrored)

<table name="type_indexes" comment_char="#" allow_duplicate_entries="False">
        <columns>value, name, path</columns>
        <file path="tool-data/twobit.loc" />    
</table>

and from twobit.loc (where the columns are tab separated):

hsapiens        H. sapiens (hg38)       /remote/RMS/users/galaxy/reference_genomes/MFEprimer_index/Homo_sapiens.GRCh38.cdna.all.fa

Any suggestions would be greatly appreciated! 

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