5 Jan
2016
5 Jan
'16
3:28 a.m.
Hi, Sorry about that but we get that error too "Failed: Request Entity Too Large (413)" on Firefox (43.0) but not on chrome (47.0.2526.106 (64-bit)). The trick to disable "ajax-upload" parameter (set it to false) does not seem to work (the window is still open and nothing changed). Any iadea would be greatful Best, Remy 2012-10-23 16:23 GMT+02:00 Nate Coraor <nate@bx.psu.edu>: > On Oct 23, 2012, at 10:06 AM, Peter Briggs wrote: > > > In case this is of use to someone else: I've been experiencing a > similar-sounding issue to that described below - the symptoms were that > only very small (e.g. 40kb) files could be uploaded successfully. > > > > The problem seemed to be caused by the SecRequestBodyLimit directive in > Apache's mod_security.conf file putting a very low limit on the size of > files. The fix (for me) was simply to up the limit to something more > appropriate. > > Hi Peter, > > Thanks for finding this, I've added this information to our documentation. > > --nate > > > > > Disabling the ajax uploads as described by Dan didn't fix the problem > but it did make the source more obvious, as Galaxy immediately reported the > error message "413 Request Entity Too Large" (with the clue about > mod_security turning up in the Apache log). > > > > I don't think this is the same problem as previously reported but maybe > this info will help someone else. > > > > Best wishes > > > > Peter > > > > On 03/08/12 14:58, David Roquis wrote: > >> Hi Dan, > >> > >> It works like a charm! Thanks a lot! I have been looking for a > >> workaround for this issue for almost a month! > >> > >> Once again, thanks you so much! > >> > >> David > >> > >> > >> ------------------------------------------------------------------------ > >> Subject: Re: [galaxy-dev] Upload issue in local installation > >> From: dan@bx.psu.edu > >> Date: Fri, 3 Aug 2012 09:24:43 -0400 > >> CC: batsal@gmail.com; galaxy-dev@lists.bx.psu.edu > >> To: david_roquis@hotmail.com > >> > >> Hi David and Bastal, > >> > >> We have been able to reproduce this behavior under certain conditions > >> and are working on a fix. Until this fix is available, you can disable > >> ajax uploads, which should allow the upload tool to work properly. > >> In tools/data_source/upload.xml change > >> > >> <param name="file_data" type="file" size="30" label="File" > >> ajax-upload="true" help="TIP: Due to browser limitations, uploading > >> files larger than 2GB is guaranteed to fail. To upload large files, use > >> the URL method (below) or FTP (if enabled by the site administrator)."> > >> > >> to > >> > >> <param name="file_data" type="file" size="30" label="File" > >> ajax-upload="False" help="TIP: Due to browser limitations, uploading > >> files larger than 2GB is guaranteed to fail. To upload large files, use > >> the URL method (below) or FTP (if enabled by the site administrator)."> > >> > >> > >> Please let us know if this workaround doesn't work for you. > >> > >> > >> Thanks for using Galaxy, > >> > >> Dan > >> > >> > >> On Aug 3, 2012, at 4:20 AM, David Roquis wrote: > >> > >> Hi Batsal, > >> > >> I have the exact same problem, on 2 different instances of Galaxy, > >> on two different servers. I can replicate this problem on a cloned > >> instance with no modification, and one using multiple galaxay > >> server, nginx proxy and postgresql, both instances being on > >> different machines (one on fedora 13, the other one on fedora 17). > >> From what I have seen, it seems to be browser related. I can > >> sometimes (rarely) upload data with firefox, chrome or safary, but > >> for me it has worked ALL the time using internet explorer 8/9. The > >> thing is that when you start the upload, the browser shows you that > >> it is uploaded, but the upload.py script is never launched, and > >> hence, the upload seems to be running forever. Seems we are not the > >> only ones with this problem, but no real solution until now. > >> > >> Two options for you at the moment > >> - try using IE 8/9 to upload the data > >> - upload your data using data libraries under the admin menu (this > >> works on any browser). > >> > >> Keep me in touch if you find a solution > >> > >> David > >> > >> > >> > >> > From:batsal@gmail.com <mailto:batsal@gmail.com> > >> > Date: Thu, 2 Aug 2012 15:48:40 -0400 > >> > To:galaxy-dev@lists.bx.psu.edu <mailto:galaxy-dev@lists.bx.psu.edu > > > >> > Subject: [galaxy-dev] Upload issue in local installation > >> > > >> > I installed galaxy locally in a linux server. However, I cannot > upload the files (no matter how small, I have tried few kb size fasta > files). When I try to upload, the link to the file shows up in the History > and gets a new number (purple box). When I click on the link I get 'Dataset > is uploading' forever. > >> > > >> > In the terminal window where I start galaxy, I get the following > error report: > >> > > >> > 92.17.41.13 - - [02/Aug/2012:15:33:32 -0400] "GET / HTTP/1.1" 200 > - "-" "Mozilla/5.0 (Windows NT 5.2; rv:13.0) Gecko/20100101 Firefox/13.0.1" > >> > 92.17.41.13 - - [02/Aug/2012:15:33:32 -0400] "GET /root/tool_menu > HTTP/1.1" 200 - "http://redhat:8080/" "Mozilla/5.0 (Windows NT 5.2; > rv:13.0) > >> Gecko/20100101 Firefox/13.0.1" > >> > 92.17.41.13 - - [02/Aug/2012:15:33:32 -0400] "GET /history > HTTP/1.1" 200 - "http://redhat:8080/" "Mozilla/5.0 (Windows NT 5.2; > rv:13.0) > >> Gecko/20100101 Firefox/13.0.1" > >> > 92.17.41.13 - - [02/Aug/2012:15:33:33 -0400] "POST > /root/user_get_usage HTTP/1.1" 200 - "http://redhat:8080/history" > "Mozilla/5.0 (Windows NT 5.2; rv:13.0) > >> Gecko/20100101 Firefox/13.0.1" > >> > 92.17.41.13 - - [02/Aug/2012:15:33:40 -0400] "GET > /tool_runner?tool_id=upload1 HTTP/1.1" 200 - " > http://redhat:8080/root/tool_menu" "Mozilla/5.0 (Windows NT 5.2; > >> rv:13.0) Gecko/20100101 Firefox/13.0.1" > >> > 92.17.41.13 - - [02/Aug/2012:15:33:59 -0400] "POST > /tool_runner/upload_async_create HTTP/1.1" 200 - "http://redhat:8080/" > "Mozilla/5.0 (Windows NT 5.2; rv:13.0) > >> Gecko/20100101 Firefox/13.0.1" > >> > 92.17.41.13 - - [02/Aug/2012:15:33:59 -0400] "GET > /tool_runner/upload_async_message HTTP/1.1" 200 - "http://redhat:8080/" > "Mozilla/5.0 (Windows NT 5.2; rv:13.0) > >> Gecko/20100101 Firefox/13.0.1" > >> > 92.17.41.13 - - [02/Aug/2012:15:33:59 -0400] "GET /history > HTTP/1.1" 200 - "http://redhat:8080/tool_runner/upload_async_message" > "Mozilla/5.0 > >> (Windows NT 5.2; rv:13.0) Gecko/20100101 Firefox/13.0.1" > >> > 92.17.41.13 - - [02/Aug/2012:15:33:59 -0400] "POST > /root/user_get_usage HTTP/1.1" 200 - "http://redhat:8080/history" > "Mozilla/5.0 (Windows NT 5.2; rv:13.0) > >> Gecko/20100101 Firefox/13.0.1" > >> > 92.17.41.13 - - [02/Aug/2012:15:34:04 -0400] "POST > /root/history_item_updates HTTP/1.1" 200 - "http://redhat:8080/history" > "Mozilla/5.0 (Windows NT 5.2; rv:13.0) > >> Gecko/20100101 Firefox/13.0.1" > >> > 92.17.41.13 - - [02/Aug/2012:15:34:08 -0400] "POST > /root/history_item_updates HTTP/1.1" 200 - "http://redhat:8080/history" > "Mozilla/5.0 (Windows NT 5.2; rv:13.0) > >> Gecko/20100101 Firefox/13.0.1" > >> > > >> > > >> > The last line keeps going for ever... writes new line every 4 secs. > >> > > >> > I am stuck and don't know where to look. Please help. > >> > > >> > Batsal. > >> > > >> > > >> > ___________________________________________________________ > >> > Please keep all replies on the list by using "reply all" > >> > in your mail client. To manage your subscriptions to this > >> > and other Galaxy lists, please use the interface at: > >> > > >> >http://lists.bx.psu.edu/ > >> ___________________________________________________________ > >> Please keep all replies on the list by using "reply all" > >> in your mail client. To manage your subscriptions to this > >> and other Galaxy lists, please use the interface at: > >> > >> http://lists.bx.psu.edu/ > >> > >> > >> > >> > >> ___________________________________________________________ > >> Please keep all replies on the list by using "reply all" > >> in your mail client. To manage your subscriptions to this > >> and other Galaxy lists, please use the interface at: > >> > >> http://lists.bx.psu.edu/ > >> > > > > -- > > Peter Briggs peter.briggs@manchester.ac.uk > > Bioinformatics Core Facility University of Manchester > > B.1083 Michael Smith Bldg Tel: (0161) 2751482 > > > > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > > > http://lists.bx.psu.edu/ > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ >