Hi Ryan,

I think you could create two regular outputs, and move the files to those outputs, i.e:

```

<command><![CDATA[

perl "$__tool_directory__"/doSomething.pl --sra "$sraid" &&

mv "${sraid}".data out.data &&

mv "${sraid}".txt out.txt

]]></command>

</inputs>

</outputs>

```

I understand that you would also like to keep the $sraid id in the history, right?

For that you should be able use `label="${sraid}.txt` on your outputs.

Cheers,

Marius

On 26 April 2016 at 20:46, Ryan G <ngsbioinformatics@gmail.com> wrote:

I'm playing around with creating a Galaxy wrapper for custom tool I've created. My tool takes a single parameter, and SRA ID. In command block, I have something like this:

<command>
${GALAXY_ROOT_DIR}/tools/mycustomtools/doSomething.pl --sra $sraid
</command>

<inputs>
<param name="sraid" ... />
</inputs>

<outputs>
<data format="txt", name="out1", from_work_dir="${sraid}.data" />
<data format="txt", name="out2", from_work_dir="${sraid}.txt" />
</outputs>

Galaxy doesn't like thr $sraid in the output. I see from the docs I need to use discover_datasets. It would be nice to use a parameter such as what I have to name output file as my script names output files use an input parameter as the base.

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