Hi Andreas, try something like the following: <destination id="20cores_10G" runner="drmaa"> <param id="nativeSpecification">-l h_vmem=10G -pe "*" 20</param> </destination> Hope that helps, Björn
Hi,
I recently updated our local galaxy instance first time after a few month. Afterwards I noticed that the way to setup job runners has changed from single lines to an extra XML-file. I now started to write a job_conf.xml but I don't understand where I put the parameters for GridEngine.
I already read http://wiki.galaxyproject.org/Admin/Config/Jobs but seem to have missed this info. For example in the old style I have lines like
velveth = drmaa://-l h_vmem=25G/
In the new style I would write
" ... <destinations> <destination id="cluster" runner="drmaa"/> </destinations> <tools> <tool id="velveth" destination="cluster"/>
</tools> ... "
But where do I put the "-l h_vmem"?
regards, Andreas