Hi Galaxy team,
I would like to create output files of my tool based on the input request. I referred to the contents at http://bitbucket.org/galaxy/galaxy-central/wiki/ToolsMultipleOutput. Here it doesn't mention how I can handle if I have more conditional statements.
<tool id="example_tool" name="Multiple output" description="example">
<command>example_tool.sh </command>
<inputs>
...
<conditional name="condition1">
...
<conditional name="condition2">
.....
<param name="format" type="select" label="Output format">
<option value="bed">BED format</option>
<option value="sam">SAM format</option>
</param>
</condition>
...
</condition>
...
</inputs>
...
<outputs>
<data format="bed" name="output1" >
<filter>condition1 condition2['format'] == "bed"</filter> ## How I can give multiple conditions.
</data>
<data format="sam" name="output2" >
<filter>condition1 condition2['format'] == "sam"</filter>
</data>
</outputs>
</tool>
Many thanks in advance,
Vipin T S