Galaxy imported a library which already existed in the python system folder. See the error message below. /home/xxxxx/work/galaxy-dist/lib/galaxy/__init__.py:79: UserWarning: Module markupsafe was already imported from /usr/lib64/python2.6/site-packages/markupsafe/__init__.pyc, but /home/xxxxx/work/galaxy-dist/eggs/MarkupSafe-0.12-py2.6-linux-x86_64-ucs4.egg is being added to sys.path self.check_version_conflict() The system package is python-markupsafe-0.9.2-4.el6.x86_64 Galaxy has a newer version, it is MarkupSafe-0.12-py2.6-linux-x86_64-ucs4.egg Any idea how to resolve this problem? Thanks, Fenglou
On Sep 11, 2012, at 12:09 PM, Fenglou Mao wrote:
Galaxy imported a library which already existed in the python system folder. See the error message below.
/home/xxxxx/work/galaxy-dist/lib/galaxy/__init__.py:79: UserWarning: Module markupsafe was already imported from /usr/lib64/python2.6/site-packages/markupsafe/__init__.pyc, but /home/xxxxx/work/galaxy-dist/eggs/MarkupSafe-0.12-py2.6-linux-x86_64-ucs4.egg is being added to sys.path self.check_version_conflict()
The system package is python-markupsafe-0.9.2-4.el6.x86_64 Galaxy has a newer version, it is MarkupSafe-0.12-py2.6-linux-x86_64-ucs4.egg
Any idea how to resolve this problem?
Hi Fenglou, Please set up a virtualenv as described on: http://usegalaxy.org/production/ --nate
Thanks, Fenglou ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
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Fenglou Mao -
Nate Coraor