Sample tracking dataset upload file browser
Hi, I just updated our Galaxy to the newest version in http://bitbucket.org/galaxy/galaxy-dist/. Now I am wondering why I don't have the nice dynamic file browser in the sample tracking dataset upload anymore. There is no extra window with a scroll bar and when I select a file and press "select datasets" nothing happens. I attached a screenshot so you can see what I'm talking about. Thank you very much for your help! Best regards, Sarah
Sarah, The older remote file browser has been replaced with a new and improved file browser. You may need to refresh the page to load the changed css for the page. The data transfer internals have also changed. It now uses Galaxy RESTful API. More information on how to setup the data transfer functionality in Galaxy sample tracking can be found at: http://main.g2.bx.psu.edu/u/rkchak/p/data-transfer. Thanks for using Galaxy rc On Nov 22, 2010, at 7:28 AM, Sarah Diehl wrote:
Hi,
I just updated our Galaxy to the newest version in http://bitbucket.org/galaxy/galaxy-dist/ . Now I am wondering why I don't have the nice dynamic file browser in the sample tracking dataset upload anymore. There is no extra window with a scroll bar and when I select a file and press "select datasets" nothing happens. I attached a screenshot so you can see what I'm talking about.
<no_file_browser.jpg>
Thank you very much for your help!
Best regards, Sarah_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
Dear Ramkrishna, thank you very much for your help! I did everything you said. I set up the sample tracking according to the linked website and also reloaded the page. I even cleared my complete browser history, but the issue is still the same. I checked all log files and none of them shows any error. The listener also successfully connected to RabbitMQ. Best regards, Sarah Am 22.11.2010 um 14:13 schrieb Ramkrishna Chakrabarty:
Sarah,
The older remote file browser has been replaced with a new and improved file browser. You may need to refresh the page to load the changed css for the page. The data transfer internals have also changed. It now uses Galaxy RESTful API. More information on how to setup the data transfer functionality in Galaxy sample tracking can be found at: http://main.g2.bx.psu.edu/u/rkchak/p/data-transfer.
Thanks for using Galaxy rc
On Nov 22, 2010, at 7:28 AM, Sarah Diehl wrote:
Hi,
I just updated our Galaxy to the newest version in http://bitbucket.org/galaxy/galaxy-dist/. Now I am wondering why I don't have the nice dynamic file browser in the sample tracking dataset upload anymore. There is no extra window with a scroll bar and when I select a file and press "select datasets" nothing happens. I attached a screenshot so you can see what I'm talking about.
<no_file_browser.jpg>
Thank you very much for your help!
Best regards, Sarah_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
Sarah, Could you send me the source html for that page. Could you also check if you have the folder, GALAXY_ROOT/static/june_2007_style/blue/ dynatree_skin in your Galaxy source directory with a bunch of gif files in it. Thanks rc On Nov 22, 2010, at 9:05 AM, Sarah Diehl wrote:
Dear Ramkrishna,
thank you very much for your help! I did everything you said. I set up the sample tracking according to the linked website and also reloaded the page. I even cleared my complete browser history, but the issue is still the same.
I checked all log files and none of them shows any error. The listener also successfully connected to RabbitMQ.
Best regards, Sarah
Am 22.11.2010 um 14:13 schrieb Ramkrishna Chakrabarty:
Sarah,
The older remote file browser has been replaced with a new and improved file browser. You may need to refresh the page to load the changed css for the page. The data transfer internals have also changed. It now uses Galaxy RESTful API. More information on how to setup the data transfer functionality in Galaxy sample tracking can be found at: http://main.g2.bx.psu.edu/u/rkchak/p/data-transfer.
Thanks for using Galaxy rc
On Nov 22, 2010, at 7:28 AM, Sarah Diehl wrote:
Hi,
I just updated our Galaxy to the newest version in http://bitbucket.org/galaxy/galaxy-dist/ . Now I am wondering why I don't have the nice dynamic file browser in the sample tracking dataset upload anymore. There is no extra window with a scroll bar and when I select a file and press "select datasets" nothing happens. I attached a screenshot so you can see what I'm talking about.
<no_file_browser.jpg>
Thank you very much for your help!
Best regards, Sarah_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
Dear Ramkrishna, I looked at the source html myself and found the error. The link to the style sheet is as follows: <link href='/static/june_2007_style/blue/dynatree_skin/ui.dynatree.css' rel='stylesheet' type='text/css'> I am using a proxy (Apache) with the prefix /galaxy. Thus, the link should also be prefixed with /galaxy. I edited templates/admin/requests/select_datasets_to_transfer.mako accordingly and now it seems to be working. However, I guess everybody else using a prefix will have the same problem. Thanks again for your help! Best regards, Sarah Am 22.11.2010 um 15:39 schrieb Ramkrishna Chakrabarty:
Sarah,
Could you send me the source html for that page. Could you also check if you have the folder, GALAXY_ROOT/static/june_2007_style/blue/dynatree_skin in your Galaxy source directory with a bunch of gif files in it.
Thanks rc
On Nov 22, 2010, at 9:05 AM, Sarah Diehl wrote:
Dear Ramkrishna,
thank you very much for your help! I did everything you said. I set up the sample tracking according to the linked website and also reloaded the page. I even cleared my complete browser history, but the issue is still the same.
I checked all log files and none of them shows any error. The listener also successfully connected to RabbitMQ.
Best regards, Sarah
Am 22.11.2010 um 14:13 schrieb Ramkrishna Chakrabarty:
Sarah,
The older remote file browser has been replaced with a new and improved file browser. You may need to refresh the page to load the changed css for the page. The data transfer internals have also changed. It now uses Galaxy RESTful API. More information on how to setup the data transfer functionality in Galaxy sample tracking can be found at: http://main.g2.bx.psu.edu/u/rkchak/p/data-transfer.
Thanks for using Galaxy rc
On Nov 22, 2010, at 7:28 AM, Sarah Diehl wrote:
Hi,
I just updated our Galaxy to the newest version in http://bitbucket.org/galaxy/galaxy-dist/. Now I am wondering why I don't have the nice dynamic file browser in the sample tracking dataset upload anymore. There is no extra window with a scroll bar and when I select a file and press "select datasets" nothing happens. I attached a screenshot so you can see what I'm talking about.
<no_file_browser.jpg>
Thank you very much for your help!
Best regards, Sarah_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
Sarah, Thank you for letting us know the problem. I have fixed it in the code. You will get it in the next release. rc On Nov 22, 2010, at 9:56 AM, Sarah Diehl wrote:
Dear Ramkrishna,
I looked at the source html myself and found the error. The link to the style sheet is as follows:
<link href='/static/june_2007_style/blue/dynatree_skin/ ui.dynatree.css' rel='stylesheet' type='text/css'> I am using a proxy (Apache) with the prefix /galaxy. Thus, the link should also be prefixed with /galaxy. I edited templates/admin/ requests/select_datasets_to_transfer.mako accordingly and now it seems to be working. However, I guess everybody else using a prefix will have the same problem.
Thanks again for your help!
Best regards, Sarah
Am 22.11.2010 um 15:39 schrieb Ramkrishna Chakrabarty:
Sarah,
Could you send me the source html for that page. Could you also check if you have the folder, GALAXY_ROOT/static/june_2007_style/ blue/dynatree_skin in your Galaxy source directory with a bunch of gif files in it.
Thanks rc
On Nov 22, 2010, at 9:05 AM, Sarah Diehl wrote:
Dear Ramkrishna,
thank you very much for your help! I did everything you said. I set up the sample tracking according to the linked website and also reloaded the page. I even cleared my complete browser history, but the issue is still the same.
I checked all log files and none of them shows any error. The listener also successfully connected to RabbitMQ.
Best regards, Sarah
Am 22.11.2010 um 14:13 schrieb Ramkrishna Chakrabarty:
Sarah,
The older remote file browser has been replaced with a new and improved file browser. You may need to refresh the page to load the changed css for the page. The data transfer internals have also changed. It now uses Galaxy RESTful API. More information on how to setup the data transfer functionality in Galaxy sample tracking can be found at: http://main.g2.bx.psu.edu/u/rkchak/p/data-transfer .
Thanks for using Galaxy rc
On Nov 22, 2010, at 7:28 AM, Sarah Diehl wrote:
Hi,
I just updated our Galaxy to the newest version in http://bitbucket.org/galaxy/galaxy-dist/ . Now I am wondering why I don't have the nice dynamic file browser in the sample tracking dataset upload anymore. There is no extra window with a scroll bar and when I select a file and press "select datasets" nothing happens. I attached a screenshot so you can see what I'm talking about.
<no_file_browser.jpg>
Thank you very much for your help!
Best regards, Sarah_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
Dear Ramkrishna, I am glad I could help you fix some bugs and thank you very much again for your help. I think it would be worth to check all templates for such static links that don't take the prefix into account. There are also some images which are not working in my setup. Best regards, Sarah Am 22.11.2010 um 16:35 schrieb Ramkrishna Chakrabarty:
Sarah,
Thank you for letting us know the problem. I have fixed it in the code. You will get it in the next release.
rc
On Nov 22, 2010, at 9:56 AM, Sarah Diehl wrote:
Dear Ramkrishna,
I looked at the source html myself and found the error. The link to the style sheet is as follows:
<link href='/static/june_2007_style/blue/dynatree_skin/ui.dynatree.css' rel='stylesheet' type='text/css'> I am using a proxy (Apache) with the prefix /galaxy. Thus, the link should also be prefixed with /galaxy. I edited templates/admin/requests/select_datasets_to_transfer.mako accordingly and now it seems to be working. However, I guess everybody else using a prefix will have the same problem.
Thanks again for your help!
Best regards, Sarah
Am 22.11.2010 um 15:39 schrieb Ramkrishna Chakrabarty:
Sarah,
Could you send me the source html for that page. Could you also check if you have the folder, GALAXY_ROOT/static/june_2007_style/blue/dynatree_skin in your Galaxy source directory with a bunch of gif files in it.
Thanks rc
On Nov 22, 2010, at 9:05 AM, Sarah Diehl wrote:
Dear Ramkrishna,
thank you very much for your help! I did everything you said. I set up the sample tracking according to the linked website and also reloaded the page. I even cleared my complete browser history, but the issue is still the same.
I checked all log files and none of them shows any error. The listener also successfully connected to RabbitMQ.
Best regards, Sarah
Am 22.11.2010 um 14:13 schrieb Ramkrishna Chakrabarty:
Sarah,
The older remote file browser has been replaced with a new and improved file browser. You may need to refresh the page to load the changed css for the page. The data transfer internals have also changed. It now uses Galaxy RESTful API. More information on how to setup the data transfer functionality in Galaxy sample tracking can be found at: http://main.g2.bx.psu.edu/u/rkchak/p/data-transfer.
Thanks for using Galaxy rc
On Nov 22, 2010, at 7:28 AM, Sarah Diehl wrote:
Hi,
I just updated our Galaxy to the newest version in http://bitbucket.org/galaxy/galaxy-dist/. Now I am wondering why I don't have the nice dynamic file browser in the sample tracking dataset upload anymore. There is no extra window with a scroll bar and when I select a file and press "select datasets" nothing happens. I attached a screenshot so you can see what I'm talking about.
<no_file_browser.jpg>
Thank you very much for your help!
Best regards, Sarah_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
participants (2)
-
Ramkrishna Chakrabarty -
Sarah Diehl