details: http://www.bx.psu.edu/hg/galaxy/rev/d427760f8fec changeset: 1494:d427760f8fec user: Greg Von Kuster <greg@bx.psu.edu> date: Mon Sep 08 09:16:32 2008 -0400 description: Fix functional test for count tool and correct spelling errors in template. 1 file(s) affected in this change: tools/filters/uniq.xml diffs (33 lines): diff -r e85d660c46ee -r d427760f8fec tools/filters/uniq.xml --- a/tools/filters/uniq.xml Fri Sep 05 16:36:51 2008 -0400 +++ b/tools/filters/uniq.xml Mon Sep 08 09:16:32 2008 -0400 @@ -1,9 +1,9 @@ <tool id="Count1" name="Count"> - <description>occurences of each record</description> + <description>occurrences of each record</description> <command interpreter="python">uniq.py -i $input -o $out_file1 -c "$column" -d $delim</command> <inputs> <param name="input" type="data" format="tabular" label="from query" help="Query missing? See TIP below"/> - <param name="column" type="data_column" data_ref="input" multiple="True" numerical="False" label="Count occurencies of values in column(s)" help="Multi-select list - hold the appropriate key while clicking to select multiple columns" /> + <param name="column" type="data_column" data_ref="input" multiple="True" numerical="False" label="Count occurrences of values in column(s)" help="Multi-select list - hold the appropriate key while clicking to select multiple columns" /> <param name="delim" type="select" label="Delimited by"> <option value="T">Tab</option> <option value="Sp">Whitespace</option> @@ -21,7 +21,7 @@ <test> <param name="input" value="1.bed"/> <output name="out_file1" file="uniq_out.dat"/> - <param name="column" value="c1"/> + <param name="column" value="1"/> <param name="delim" value="T"/> </test> </tests> @@ -35,7 +35,7 @@ **Syntax** -This tool counts occurences of unique values in selected column(s). +This tool counts occurrences of unique values in selected column(s). - If multiple columns are selected, counting is performed on each unique group of all values in the selected columns. - The first column of the resulting query will be the count of unique values in the selected column(s) and will be followed by each value.