Hello,
Can anyone tell me why I keep getting this error when I try to do a blast search in Galaxy? I checked that the nr database file was there and had the right permissions. Does this error mean that Galaxy can't find the nr file or does it mean something else?
------------ An error occurred running this job:BLAST Database error: No alias or index file found for protein database [/9720/genome_references/ncbi/nr-protein-db/nr-newstyle/nr] in search path [/9720/galaxyprod/galaxy-dist/database/job_working_directory/1485::] Return error code 2 from command: blast -------------
Thank you. Ken.
On Wed, Sep 12, 2012 at 12:16 AM, Kenneth R. Auerbach kauerbach@comcast.net wrote:
Hello,
Can anyone tell me why I keep getting this error when I try to do a blast search in Galaxy? I checked that the nr database file was there and had the right permissions. Does this error mean that Galaxy can't find the nr file or does it mean something else?
An error occurred running this job:BLAST Database error: No alias or index file found for protein database [/9720/genome_references/ncbi/nr-protein-db/nr-newstyle/nr] in search path [/9720/galaxyprod/galaxy-dist/database/job_working_directory/1485::] Return error code 2 from command: blast
Thank you. Ken.
I already replied to this question when you asked yesterday (and used a more specific email subject - "Galaxy error" is not helpful): http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-September/011066.html
Regards,
Peter
galaxy-dev@lists.galaxyproject.org