problems wit upgrading to "latest_15.03" - 'UniverseApplication' object has no attribute 'control_worker'
Hi I am in the process of updating our development server (from "latest_2014.10.06", including the security fix from January to "latest_15.03" ). and when I restart the server, I get the following error: ... galaxy.jobs.handler INFO 2015-04-14 15:46:05,180 sending stop signal to worker thread galaxy.jobs.handler INFO 2015-04-14 15:46:05,181 job handler stop queue stopped Error in atexit._run_exitfuncs: Traceback (most recent call last): File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs func(*targs, **kargs) File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in shutdown if self.control_worker: AttributeError: 'UniverseApplication' object has no attribute 'control_worker' Error in sys.exitfunc: Traceback (most recent call last): File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs func(*targs, **kargs) File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in shutdown if self.control_worker: AttributeError: 'UniverseApplication' object has no attribute 'control_worker' Any help appreciated Thank you very much Hans-Rudolf -- Hans-Rudolf Hotz, PhD Bioinformatics Support Friedrich Miescher Institute for Biomedical Research Maulbeerstrasse 66 4058 Basel/Switzerland
This logic was tweaked a bit in the last release to fix this working under uWSGI, but I'm not seeing it in a fresh checkout (and was pretty sure it worked before). The control queue should be initialized at the end of galaxy's main buildapp() method. How is the application being run? (under uwsgi, paste, how many processes, etc) Do you see any other errors in the startup log at all? And, do you see "Initializing Galaxy Queue Worker" anywhere in the log (I'm guessing not)? On Tue, Apr 14, 2015 at 10:47 AM Hans-Rudolf Hotz <hrh@fmi.ch> wrote:
Hi
I am in the process of updating our development server (from "latest_2014.10.06", including the security fix from January to "latest_15.03" ).
and when I restart the server, I get the following error:
... galaxy.jobs.handler INFO 2015-04-14 15:46:05,180 sending stop signal to worker thread galaxy.jobs.handler INFO 2015-04-14 15:46:05,181 job handler stop queue stopped Error in atexit._run_exitfuncs: Traceback (most recent call last): File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs func(*targs, **kargs) File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in shutdown if self.control_worker: AttributeError: 'UniverseApplication' object has no attribute 'control_worker' Error in sys.exitfunc: Traceback (most recent call last): File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs func(*targs, **kargs) File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in shutdown if self.control_worker: AttributeError: 'UniverseApplication' object has no attribute 'control_worker'
Any help appreciated
Thank you very much Hans-Rudolf
--
Hans-Rudolf Hotz, PhD Bioinformatics Support
Friedrich Miescher Institute for Biomedical Research Maulbeerstrasse 66 4058 Basel/Switzerland ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please ignore my previous e-mail. The error was actually further up in the logs, and easy to fix. - sorry for filling up your inbox Hans-Rudolf PS: personal memo: don't do four galaxy related things at once. On 04/14/2015 04:47 PM, Hans-Rudolf Hotz wrote:
Hi
I am in the process of updating our development server (from "latest_2014.10.06", including the security fix from January to "latest_15.03" ).
and when I restart the server, I get the following error:
... galaxy.jobs.handler INFO 2015-04-14 15:46:05,180 sending stop signal to worker thread galaxy.jobs.handler INFO 2015-04-14 15:46:05,181 job handler stop queue stopped Error in atexit._run_exitfuncs: Traceback (most recent call last): File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs func(*targs, **kargs) File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in shutdown if self.control_worker: AttributeError: 'UniverseApplication' object has no attribute 'control_worker' Error in sys.exitfunc: Traceback (most recent call last): File "/usr/lib64/python2.6/atexit.py", line 24, in _run_exitfuncs func(*targs, **kargs) File "/path_to_galaxy/galaxy_dist/lib/galaxy/app.py", line 167, in shutdown if self.control_worker: AttributeError: 'UniverseApplication' object has no attribute 'control_worker'
Any help appreciated
Thank you very much Hans-Rudolf
participants (2)
-
Dannon Baker -
Hans-Rudolf Hotz