What kind of database backend are you using (postgres, myql, or the
default sqlite)?
If you are running many jobs - I would definitely encourage using postgres.
-John
On Sun, Mar 13, 2016 at 2:48 PM, Zuzanna K. Filutowska
<platyna(a)man.poznan.pl> wrote:
Dear All,
I am running newest version of Galaxy with PBS and I am observing
strange behaviour: some jobs that were finished on the queue system are
still shown as running on Galaxy Web interface. Communication with PBS
server seems to work fine all the time. Nothing interesting seems to be
in logs despite debug being on:
sqlalchemy.pool.QueuePool ERROR 2016-03-13 11:36:02,544 Error closing
cursor
Any ideas, what can be a problem?
--
Pozdrawiam,
--
Zuzanna K. Filutowska, HPC Systems Administrator
Poznan Supercomputing and Networking Center
Institute of Bioorganic Chemistry Polish Academy of Sciences
Seize the day boys! Make your lifes extraordinary! --John Keating
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/