On 06/09/2011 02:47 PM, Arun Selvam wrote:

Hi,

I am new to galaxy, I just downloaded and installed galaxy on my MAC system. I also download bowtie , and it is working perfectly on the command line. But am not able to see the bowtie option under mapping in the galaxy menu.

Are you sure, you did not comment'out it in the 'tool_conf.xml'? Do you get an error in the log file after restart, following the line: galaxy.tools DEBUG 2011-06-09 15:08:52,316 Loaded tool: bowtie_wrapper 1.1.2 Regards, Hans

Do I have to do another modifications like move into particular folder or create some files or set path ? Could anyone please help me on this ?

Thank you

Arun

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