Glad to hear you got Galaxy running successfully. It sounds like
everything is good to go once we sort out the disk space issue.
> However, when I try to use NX to get the virtual desktop going I
> message usr/bin/nxserver: line 381: echo: write error: No space left
> on device.
> Using the df -h command, I get:
> Filesystem Size Used Avail Use% Mounted on
> /dev/xvda1 20G 19G 0 100% /
> udev 8.4G 4.0K 8.4G 1% /dev
> tmpfs 3.4G 660K 3.4G 1% /run
> none 5.0M 0 5.0M 0% /run/lock
> none 8.4G 0 8.4G 0% /run/shm
> /dev/xvdb 404G 202M 383G 1% /mnt
> /dev/xvdg1 700G 654G 47G 94% /mnt/galaxyIndices
> /dev/xvdg2 10G 1.7G 8.4G 17% /mnt/galaxyTools
> /dev/xvdg3 200G 11G 190G 6% /mnt/galaxyData
> So, I guess my question as a new user is: How do I point Galaxy and
> CloudBioLinux to all of this unused space?
By default CloudMan will put files into /mnt/galaxyData. However, as
you noticed the main filesystem got filled up at some point. Could this
have happened while transferring files over from S3? Are there files in
your home directory that you could delete or move to /mnt/galaxyData to
free up space?
CloudBioLinux and CloudMan shouldn't put a large number of files in the
root directory, but when the root filesystem is full it's going to be
very unhappy. Once you manually clear up some room there hopefully
things will run smoother.
If that doesn't help let us know and we can dig into it further. Thanks,