Data manager for the BLAST database *.loc files?
Hi Daniel, Would you be OK with me/us incorporating your example Galaxy Data Manager [1] for NCBI BLAST databases http://testtoolshed.g2.bx.psu.edu/view/blankenberg/data_manager_example_blas... into the Galaxy BLAST wrappers repository https://github.com/peterjc/galaxy_blast/ under the MIT licence, and then extending it? If you have a GitHub account I can do that as a commit with you as the author to make the attribution explicit. See also https://github.com/peterjc/galaxy_blast/issues/22 where we're discussing this issue. Thanks, Peter [1] This is described in Daniel's new paper, Blankenberg et al (2014) Wrangling Galaxy's reference data http://dx.doi.org/10.1093/bioinformatics/btu119 and the Galaxy wiki: https://wiki.galaxyproject.org/Admin/Tools/DataManagers
Hi Peter, It would be great to have the BLAST tools use tool data tables and Data Managers. Let me know what I can do to help. Thanks, Dan On Apr 7, 2014, at 11:48 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
Hi Daniel,
Would you be OK with me/us incorporating your example Galaxy Data Manager [1] for NCBI BLAST databases http://testtoolshed.g2.bx.psu.edu/view/blankenberg/data_manager_example_blas... into the Galaxy BLAST wrappers repository https://github.com/peterjc/galaxy_blast/ under the MIT licence, and then extending it?
If you have a GitHub account I can do that as a commit with you as the author to make the attribution explicit.
See also https://github.com/peterjc/galaxy_blast/issues/22 where we're discussing this issue.
Thanks,
Peter
[1] This is described in Daniel's new paper,
Blankenberg et al (2014) Wrangling Galaxy's reference data http://dx.doi.org/10.1093/bioinformatics/btu119
and the Galaxy wiki:
On Mon, Apr 7, 2014 at 5:38 PM, Daniel Blankenberg <dan@bx.psu.edu> wrote:
Hi Peter,
It would be great to have the BLAST tools use tool data tables and Data Managers. Let me know what I can do to help.
Thanks,
Dan
That's great Dan - I see you've commented on GitHub, so we can continue this there: https://github.com/peterjc/galaxy_blast/issues/22 Thanks, Peter
participants (2)
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Daniel Blankenberg
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Peter Cock