Galaxy Main Server Tool Repository
Dear all, New bee here. Wonder if this is the right place to post following questions: We are interested in setting up a server like galaxy main server. Wonder which Linux Platform is the main server running on. Also is there a method for batch installing tools that now are available on the main galaxy server? If not, wonder if can point me to the documentation of the main galaxy server installation. Please excuse me if this is not the right list! Thanks a lot! Charlie -- Li Charlie Xia PhD Candidate Computational Biology and Bioinformatics Program at University of Southern California 1050 Childs Way, RRI 416C Los Angeles, CA 90089-2910, USA OP: 213-740-5168
Hi Charlie, Our main galaxy server is actually running CentOS 5.10. The galaxy cloud instances are built on Ubuntu 10.04 LTS. That said, as far as I know, any *nix with python 2.5 or above should work fine. The following two links have lots of information regarding setting up your own server: http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup Automated setup of many tools is available currently via mi-deployment, see https://bitbucket.org/afgane/mi-deployment for more information on that. In coming months, automated deployment of many tool binaries will be available directly from within Galaxy via the Tool Shed. And lastly, this is definitely the right list for this type of question. Thanks for your interest in Galaxy! Dannon On Feb 6, 2012, at 4:53 PM, Li Charlie Xia wrote:
Dear all,
New bee here. Wonder if this is the right place to post following questions:
We are interested in setting up a server like galaxy main server. Wonder which Linux Platform is the main server running on. Also is there a method for batch installing tools that now are available on the main galaxy server? If not, wonder if can point me to the documentation of the main galaxy server installation.
Please excuse me if this is not the right list! Thanks a lot!
Charlie
-- Li Charlie Xia PhD Candidate Computational Biology and Bioinformatics Program at University of Southern California 1050 Childs Way, RRI 416C Los Angeles, CA 90089-2910, USA OP: 213-740-5168 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Hi Charlie, Just a minor correction, the Main server is Solaris 10, the clusters on which jobs run are Debian testing/unstable and RHEL 5.7. --nate On Feb 6, 2012, at 9:01 PM, Dannon Baker wrote:
Hi Charlie,
Our main galaxy server is actually running CentOS 5.10. The galaxy cloud instances are built on Ubuntu 10.04 LTS. That said, as far as I know, any *nix with python 2.5 or above should work fine.
The following two links have lots of information regarding setting up your own server:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup
Automated setup of many tools is available currently via mi-deployment, see https://bitbucket.org/afgane/mi-deployment for more information on that. In coming months, automated deployment of many tool binaries will be available directly from within Galaxy via the Tool Shed.
And lastly, this is definitely the right list for this type of question. Thanks for your interest in Galaxy!
Dannon
On Feb 6, 2012, at 4:53 PM, Li Charlie Xia wrote:
Dear all,
New bee here. Wonder if this is the right place to post following questions:
We are interested in setting up a server like galaxy main server. Wonder which Linux Platform is the main server running on. Also is there a method for batch installing tools that now are available on the main galaxy server? If not, wonder if can point me to the documentation of the main galaxy server installation.
Please excuse me if this is not the right list! Thanks a lot!
Charlie
-- Li Charlie Xia PhD Candidate Computational Biology and Bioinformatics Program at University of Southern California 1050 Childs Way, RRI 416C Los Angeles, CA 90089-2910, USA OP: 213-740-5168 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Thanks for replying. I will check the them out. On Tue, Feb 7, 2012 at 5:31 AM, Nate Coraor <nate@bx.psu.edu> wrote:
Hi Charlie,
Just a minor correction, the Main server is Solaris 10, the clusters on which jobs run are Debian testing/unstable and RHEL 5.7.
--nate
On Feb 6, 2012, at 9:01 PM, Dannon Baker wrote:
Hi Charlie,
Our main galaxy server is actually running CentOS 5.10. The galaxy cloud instances are built on Ubuntu 10.04 LTS. That said, as far as I know, any *nix with python 2.5 or above should work fine.
The following two links have lots of information regarding setting up your own server:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup
Automated setup of many tools is available currently via mi-deployment, see https://bitbucket.org/afgane/mi-deployment for more information on that. In coming months, automated deployment of many tool binaries will be available directly from within Galaxy via the Tool Shed.
And lastly, this is definitely the right list for this type of question. Thanks for your interest in Galaxy!
Dannon
On Feb 6, 2012, at 4:53 PM, Li Charlie Xia wrote:
Dear all,
New bee here. Wonder if this is the right place to post following questions:
We are interested in setting up a server like galaxy main server. Wonder which Linux Platform is the main server running on. Also is there a method for batch installing tools that now are available on the main galaxy server? If not, wonder if can point me to the documentation of the main galaxy server installation.
Please excuse me if this is not the right list! Thanks a lot!
Charlie
-- Li Charlie Xia PhD Candidate Computational Biology and Bioinformatics Program at University of Southern California 1050 Childs Way, RRI 416C Los Angeles, CA 90089-2910, USA OP: 213-740-5168 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Li Charlie Xia PhD Candidate Computational Biology and Bioinformatics Program at University of Southern California 1050 Childs Way, RRI 416C Los Angeles, CA 90089-2910, USA OP: 213-740-5168
participants (3)
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Dannon Baker -
Li Charlie Xia -
Nate Coraor