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Hi,
Is there any way to convert a certain section of a bam file to fastq
using the galaxy tools? I just want to convert a certain part of the
genome. Thanks.
Aaron
Attachments:
- attachment.htm (text/html — 595 bytes)
Hi Aaron,
On 07/06/2011 04:45 PM, Zschunke, Aaron M. wrote:
Is there any way to convert a certain section of a bam file to fastq
using the galaxy tools? I just want to convert a certain part of the
genome. Thanks.
there is the bam_to_fastq tool on the toolshed
(http://toolshed.g2.bx.psu.edu/) in the SAM subsection.
Regards,
Holger
--
Dr. Holger Klein
Core Facility Bioinformatics
Institute of Molecular Biology gGmbH (IMB)
http://www.imb-mainz.de/
Tel: +49(6131) 39 21511
4226
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4226
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galaxy-dev@lists.galaxyproject.org
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Zschunke, Aaron M.