6 Jul
2011
6 Jul
'11
10:45 a.m.
Hi,
Is there any way to convert a certain section of a bam file to fastq using the galaxy tools? I just want to convert a certain part of the genome. Thanks.
Aaron
6 Jul
6 Jul
11:19 a.m.
Hi Aaron,
On 07/06/2011 04:45 PM, Zschunke, Aaron M. wrote:
Is there any way to convert a certain section of a bam file to fastq using the galaxy tools? I just want to convert a certain part of the genome. Thanks.
there is the bam_to_fastq tool on the toolshed (http://toolshed.g2.bx.psu.edu/) in the SAM subsection.
Regards, Holger
--
Dr. Holger Klein
Core Facility Bioinformatics
Institute of Molecular Biology gGmbH (IMB)
http://www.imb-mainz.de/
Tel: +49(6131) 39 21511
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Holger Klein -
Zschunke, Aaron M.