Change "Manage data Libraries"
Hello everyone, I'm trying to change some options in the Manage data Libraries.Especially in the Server Directory, by clicking the "Upload directory of file" in Upload option. So I've changed "universe_wsgi.ini" file and add for library_import_dir my directory. The problem is that I can see only one directory link in Galaxy. I've tried to write two times "library_import_dir" but it's not working, only the last directory is taken into account : library_import_dir = /sequences/fasta/maize/ library_import_dir = /home/***/blastdb_loc/ Also tried to insert a comma but it appears in Galaxy : library_import_dir = /sequences/fasta/maize/, /home/***/blastdb_loc/ Someone has an idea ?Advance thanks, Siva
On Wed, Mar 14, 2012 at 6:07 AM, Sivasangari NANDY <nsiva3@hotmail.com> wrote:
I've tried to write two times "library_import_dir" but it's not working, only the last directory is taken into account :
library_import_dir = /sequences/fasta/maize/ library_import_dir = /home/***/blastdb_loc/
Hi Siva, You could have only one import directory in universe_wsgi.ini and place links to other directories in the configured directory. Galaxy will let you select from which directory(or link to directory) you want to import files when importing. Hope it helps, Carlos
Hello, Do you mean a symlink ?
From: carlos.borroto@gmail.com Date: Wed, 14 Mar 2012 12:57:29 -0400 Subject: Re: [galaxy-dev] Change "Manage data Libraries" To: nsiva3@hotmail.com CC: galaxy-dev@lists.bx.psu.edu
On Wed, Mar 14, 2012 at 6:07 AM, Sivasangari NANDY <nsiva3@hotmail.com> wrote:
I've tried to write two times "library_import_dir" but it's not working, only the last directory is taken into account :
library_import_dir = /sequences/fasta/maize/ library_import_dir = /home/***/blastdb_loc/
Hi Siva,
You could have only one import directory in universe_wsgi.ini and place links to other directories in the configured directory. Galaxy will let you select from which directory(or link to directory) you want to import files when importing.
Hope it helps, Carlos
Yes. For example setting "library_import_dir = /GALAXY_PATH/database/files/import", you would do something like: $ cd /GALAXY_PATH/database/files/import $ ln -s /sequences/fasta/maize $ ln -s /home/$USERNAME/blastdb_loc After this, you will have the option of selecting from "maize" or "blastdb_loc" directories in the "Server Directory" option when uploading a directory of files. Hope it helps, Carlos On Wed, Mar 21, 2012 at 11:46 AM, Sivasangari NANDY <nsiva3@hotmail.com> wrote:
Hello,
Do you mean a symlink ?
From: carlos.borroto@gmail.com Date: Wed, 14 Mar 2012 12:57:29 -0400 Subject: Re: [galaxy-dev] Change "Manage data Libraries" To: nsiva3@hotmail.com CC: galaxy-dev@lists.bx.psu.edu
On Wed, Mar 14, 2012 at 6:07 AM, Sivasangari NANDY <nsiva3@hotmail.com> wrote:
I've tried to write two times "library_import_dir" but it's not working, only the last directory is taken into account :
library_import_dir = /sequences/fasta/maize/ library_import_dir = /home/***/blastdb_loc/
Hi Siva,
You could have only one import directory in universe_wsgi.ini and place links to other directories in the configured directory. Galaxy will let you select from which directory(or link to directory) you want to import files when importing.
Hope it helps, Carlos
Thank you Tyler and Carlos it's working. Siva
From: carlos.borroto@gmail.com Date: Wed, 21 Mar 2012 16:26:48 -0400 Subject: Re: [galaxy-dev] Change "Manage data Libraries" To: nsiva3@hotmail.com CC: galaxy-dev@lists.bx.psu.edu
Yes. For example setting "library_import_dir = /GALAXY_PATH/database/files/import", you would do something like: $ cd /GALAXY_PATH/database/files/import $ ln -s /sequences/fasta/maize $ ln -s /home/$USERNAME/blastdb_loc
After this, you will have the option of selecting from "maize" or "blastdb_loc" directories in the "Server Directory" option when uploading a directory of files.
Hope it helps, Carlos
On Wed, Mar 21, 2012 at 11:46 AM, Sivasangari NANDY <nsiva3@hotmail.com> wrote:
Hello,
Do you mean a symlink ?
From: carlos.borroto@gmail.com Date: Wed, 14 Mar 2012 12:57:29 -0400 Subject: Re: [galaxy-dev] Change "Manage data Libraries" To: nsiva3@hotmail.com CC: galaxy-dev@lists.bx.psu.edu
On Wed, Mar 14, 2012 at 6:07 AM, Sivasangari NANDY <nsiva3@hotmail.com> wrote:
I've tried to write two times "library_import_dir" but it's not working, only the last directory is taken into account :
library_import_dir = /sequences/fasta/maize/ library_import_dir = /home/***/blastdb_loc/
Hi Siva,
You could have only one import directory in universe_wsgi.ini and place links to other directories in the configured directory. Galaxy will let you select from which directory(or link to directory) you want to import files when importing.
Hope it helps, Carlos
participants (2)
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Carlos Borroto -
Sivasangari NANDY