I noticed that the sparql_uniprot tool does not run (python3 incompatibility). Since there is no github page I do not know how to contribute to such a tool. I have a similar problem with the lefse tool. What would be the best way to fix sich tools? Best, Matthias -- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------
I infer you are talking about this Tool Shed repository: https://toolshed.g2.bx.psu.edu/view/fabad/sparql_uniprot/ Sadly there is no README file and no copyright statements. The only clue to the author is one comment is written appears to be written in Spanish. Based on https://toolshed.g2.bx.psu.edu/view/fabad/ this is their first and only Tool Shed release. I have sent "fabad" a message via the Tool Shed (you need to be logged into a Tool Shed account to do this) pointing them at this thread. Regards, Peter On Fri, Oct 20, 2017 at 2:34 PM, Matthias Bernt <m.bernt@ufz.de> wrote:
I noticed that the sparql_uniprot tool does not run (python3 incompatibility). Since there is no github page I do not know how to contribute to such a tool. I have a similar problem with the lefse tool.
What would be the best way to fix sich tools?
Best, Matthias
--
------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de
Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann ------------------------------------------- ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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participants (2)
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Matthias Bernt
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Peter Cock