Lee;

Hi, I would like to autofill "cycles" for next-gen sequencing. Most of our submitters probably don't even know what that means actually and so we want to simplify it. Same goes with paired end reads. How would I fill out the nglims yaml file so that they could skip over that section? Or maybe just hit "next" an extra time? Anything to simplify it. Thank you (and especially Brad)!

It should be doing exactly what you describe for cycles and method. It will pre-fill the pull down box with the first option when specified as a list of choices: https://bitbucket.org/chapmanb/galaxy-central/src/395ade9a9bda518c63daa0208b... If you add `freetext: true` like: https://bitbucket.org/chapmanb/galaxy-central/src/395ade9a9bda518c63daa0208b... it will no longer do this since you can also type in other options. It sounds like what you need for this case is to restrict the options and default to the most common case you want to support. In this case the researcher doesn't have to change anything and is checking that the default options match their expectations before hitting next. Hope this helps, Brad