Hi - I'm running CentOS 5.5. My version of python is: [root@genomes ~]# which python /usr/bin/python [root@genomes ~]# python -V Python 2.4.3 I just downloaded galaxy to run a local instance using: hg clone http://www.bx.psu.edu/hg/galaxy galaxy_dist and then tried to run it using 'sh run.sh'. When I do so, galaxy proceeds to download eggs that are out of date. After doing some fetching, I see: One or more of the python eggs necessary to run Galaxy couldn't be downloaded automatically. You can try building them by hand (all at once) with: python scripts/scramble.py Or individually: python scripts/scramble.py python_daemon Fetch failed. What does this mean?
When I try to run 'python scripts/scramble.py', I get an error: Traceback (most recent call last): File "scramble.py", line 29, in ? execfile( "setup.py", globals(), locals() ) File "setup.py", line 22, in ? main_module = __import__(main_module_name, fromlist=['version']) TypeError: __import__() takes no keyword arguments scramble(): Egg already exists, remove to force rebuild: /usr/lib/python2.4/site-packages scramble(): Egg already exists, remove to force rebuild: /mnt/ibmfcarray/galaxy_dist/eggs/sqlalchemy_migrate-0.5.4-py2.4.egg scramble(): Egg already exists, remove to force rebuild: /mnt/ibmfcarray/galaxy_dist/eggs/WebOb-0.8.5-py2.4.egg scramble(): Egg already exists, remove to force rebuild: /mnt/ibmfcarray/galaxy_dist/eggs/PasteScript-1.7.3-py2.4.egg Traceback (most recent call last): File "scripts/scramble.py", line 23, in ? eggs = c.scramble() File "/mnt/ibmfcarray/galaxy_dist/lib/galaxy/eggs/scramble.py", line 243, in scramble raise last_exc # only 1 failure out of the crate, be more informative galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for python_daemon 1.5.5 On 2/16/11 12:58 AM, Ryan Golhar wrote:
Hi - I'm running CentOS 5.5. My version of python is:
[root@genomes ~]# which python /usr/bin/python [root@genomes ~]# python -V Python 2.4.3
I just downloaded galaxy to run a local instance using:
hg clone http://www.bx.psu.edu/hg/galaxy galaxy_dist
and then tried to run it using 'sh run.sh'. When I do so, galaxy proceeds to download eggs that are out of date. After doing some fetching, I see:
One or more of the python eggs necessary to run Galaxy couldn't be downloaded automatically. You can try building them by hand (all at once) with: python scripts/scramble.py Or individually: python scripts/scramble.py python_daemon Fetch failed.
What does this mean?
Hi Ryan, I think you might want to upgrade your Python version. I was facing this issue and Python 2.6.6 version fixed it. Regards, Sonali -----Original Message----- From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Ryan Golhar Sent: Wednesday, February 16, 2011 11:29 AM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] New install problem Hi - I'm running CentOS 5.5. My version of python is: [root@genomes ~]# which python /usr/bin/python [root@genomes ~]# python -V Python 2.4.3 I just downloaded galaxy to run a local instance using: hg clone http://www.bx.psu.edu/hg/galaxy galaxy_dist and then tried to run it using 'sh run.sh'. When I do so, galaxy proceeds to download eggs that are out of date. After doing some fetching, I see: One or more of the python eggs necessary to run Galaxy couldn't be downloaded automatically. You can try building them by hand (all at once) with: python scripts/scramble.py Or individually: python scripts/scramble.py python_daemon Fetch failed. What does this mean? _______________________________________________ To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ DISCLAIMER ========== This e-mail may contain privileged and confidential information which is the property of Persistent Systems Ltd. It is intended only for the use of the individual or entity to which it is addressed. If you are not the intended recipient, you are not authorized to read, retain, copy, print, distribute or use this message. If you have received this communication in error, please notify the sender and delete all copies of this message. Persistent Systems Ltd. does not accept any liability for virus infected mails.
Sonali Amonkar wrote:
Hi Ryan, I think you might want to upgrade your Python version. I was facing this issue and Python 2.6.6 version fixed it.
It's correct that there's a bug in the current distribution version that prevents it from running on Python 2.4. However, we have a new release on the way that should run on Python 2.4. The plan is for it to be released by Friday. In the meantime, you can pull from our in-development repository, if you'd like: % hg pull -u http://bitbucket.org/galaxy/galaxy-central/ --nate
Regards, Sonali
-----Original Message----- From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Ryan Golhar Sent: Wednesday, February 16, 2011 11:29 AM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] New install problem
Hi - I'm running CentOS 5.5. My version of python is:
[root@genomes ~]# which python /usr/bin/python [root@genomes ~]# python -V Python 2.4.3
I just downloaded galaxy to run a local instance using:
hg clone http://www.bx.psu.edu/hg/galaxy galaxy_dist
and then tried to run it using 'sh run.sh'. When I do so, galaxy proceeds to download eggs that are out of date. After doing some fetching, I see:
One or more of the python eggs necessary to run Galaxy couldn't be downloaded automatically. You can try building them by hand (all at once) with: python scripts/scramble.py Or individually: python scripts/scramble.py python_daemon Fetch failed.
What does this mean?
_______________________________________________ To manage your subscriptions to this and other Galaxy lists, please use the interface at:
DISCLAIMER ========== This e-mail may contain privileged and confidential information which is the property of Persistent Systems Ltd. It is intended only for the use of the individual or entity to which it is addressed. If you are not the intended recipient, you are not authorized to read, retain, copy, print, distribute or use this message. If you have received this communication in error, please notify the sender and delete all copies of this message. Persistent Systems Ltd. does not accept any liability for virus infected mails.
_______________________________________________ To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (3)
-
Nate Coraor -
Ryan Golhar -
Sonali Amonkar