Thank you ! Can you tell me which files are to update or download ? I installed my application on a server that was not open to the outside. Currently I do not support different versions or updates of my application with git. I can download the files to edit and transfer them to the server but not to update the entire application at the moment.

F. T Le 21 oct. 2015 12:11 PM, "Floreline TOUCHARD" floreline.touchard@gmail.com a écrit :

Hi,

I've got an issue with my external authentication configuration. I use Apache and the mod_perl

modules (AuthenNIS + AuthzNIS + Net-NIS) to authenticate to galaxy with NIS accounts.

I have the authentication form when I try to access galaxy web page. But after a successful authentication it seems that the REMOTE_USER variable is not passed to my galaxy instance. I'm connected under "@ example.org" regardless of the authentication account. That's why I think the REMOTE_USER passed to Galaxy is not 'null' but empty.

I tested the value of the variable with the following php script:

<?PHP foreach($_SERVER as $key_name => $key_value) { print $key_name . " = " . $key_value . "<br>"; } ?>

I've got a REMOTE_USER et HTTP_REMOTE_USER with a username value.

I don't understand where my problem lies.

Here is my galaxy.conf file :

Listen 2208

<VirtualHost *:2208>

    RewriteEngine on
    DocumentRoot "/path/to/static"

<Directory "/path/to/static">

    Options +Indexes FollowSymLinks MultiViews
    AllowOverride None
    Order allow,deny
    Allow from all


    AuthType Basic
    AuthName "Authentifiez vous"
    PerlAuthenHandler Apache2::AuthenNIS
    PerlAuthzHandler Apache2::AuthzNIS
    PerlSetVar AllowAlternateAuth no
    require valid-user

</Directory>

    RewriteEngine on
    RewriteRule . - [E=RU:%{LA-U:REMOTE_USER}]
    RequestHeader set REMOTE_USER %{RU}e

RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/static/style/(.*) /path/to/static/june_2007_style/blue/$1 [L] RewriteRule ^/static/scripts/(.*) /softhpc/galaxy/test/galaxy-master/static/scripts/packed/$1

[L] RewriteRule ^/static/(.*) /path/to/static/$1 [L] RewriteRule ^/favicon.ico /path/to/static/favicon.ico [L] RewriteRule ^/robots.txt /path/to/static/robots.txt [L] RewriteRule ^(.*) http://localhost:2209$1 [P]

</VirtualHost>

Thanks in advance !

F.T

Hi,

here is some additional information :

- I have no change in my paster.log with my current galaxy.conf file.

- If I force the connexion with a user (with a RequestHeader set REMOTE_USER "<username>" in galaxy.conf), it works. My galaxy instance open on my user session, and I get a "galaxy.web.framework.webapp WARNING 2015-10-22 10:37:19,762 User logged in as '<username>@example.fr' externally, but has a cookie as '@example.fr' invalidating session" in the paster.log.

Is it a syntax problem in my galaxy.conf file ?

F.T

2015-10-21 12:11 GMT+02:00 Floreline TOUCHARD floreline.touchard@gmail.com :

Hi,

I've got an issue with my external authentication configuration. I use Apache and the mod_perl

modules (AuthenNIS + AuthzNIS + Net-NIS) to authenticate to galaxy with NIS accounts.

I have the authentication form when I try to access galaxy web page. But after a successful authentication it seems that the REMOTE_USER variable is not passed to my galaxy instance. I'm connected under "@ example.org" regardless of the authentication account. That's why I think the REMOTE_USER passed to Galaxy is not 'null' but empty.

I tested the value of the variable with the following php script:

<?PHP foreach($_SERVER as $key_name => $key_value) { print $key_name . " = " . $key_value . "<br>"; } ?>

I've got a REMOTE_USER et HTTP_REMOTE_USER with a username value.

I don't understand where my problem lies.

Here is my galaxy.conf file :

Listen 2208

<VirtualHost *:2208>

    RewriteEngine on
    DocumentRoot "/path/to/static"

<Directory "/path/to/static">

    Options +Indexes FollowSymLinks MultiViews
    AllowOverride None
    Order allow,deny
    Allow from all


    AuthType Basic
    AuthName "Authentifiez vous"
    PerlAuthenHandler Apache2::AuthenNIS
    PerlAuthzHandler Apache2::AuthzNIS
    PerlSetVar AllowAlternateAuth no
    require valid-user

</Directory>

    RewriteEngine on
    RewriteRule . - [E=RU:%{LA-U:REMOTE_USER}]
    RequestHeader set REMOTE_USER %{RU}e

RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/static/style/(.*) /path/to/static/june_2007_style/blue/$1 [L] RewriteRule ^/static/scripts/(.*) /softhpc/galaxy/test/galaxy-master/static/scripts/packed/$1

[L] RewriteRule ^/static/(.*) /path/to/static/$1 [L] RewriteRule ^/favicon.ico /path/to/static/favicon.ico [L] RewriteRule ^/robots.txt /path/to/static/robots.txt [L] RewriteRule ^(.*) http://localhost:2209$1 [P]

</VirtualHost>

Thanks in advance !

F.T