Hi,
recently I installed the idr_package from the Galaxy tool-shed but the tool IDR-plot does not work for my Galaxy instance.
This is the error message:
GPL Ghostscript 8.70: **** Could not open temporary file ./database/tmp/gs_DtCtic **** Unable to open the initial device, quitting. mv: cannot stat `./idrPlot-plot.pdf': No such file or directory
It seems it doesn't find an expected temporary file. Does anybody have suggestions?
Many thanks
Hi,
my guess is that some previous steps failed and the assumed tempfile was not created. That can have many different reasons, probably some R dependencies are missing. Try to run the generated commandline from your terminal and catch more error messages.
Cheers, Bjoern
Hi,
recently I installed the idr_package from the Galaxy tool-shed but the tool IDR-plot does not work for my Galaxy instance.
This is the error message:
GPL Ghostscript 8.70: **** Could not open temporary file ./database/tmp/gs_DtCtic **** Unable to open the initial device, quitting. mv: cannot stat `./idrPlot-plot.pdf': No such file or directory
It seems it doesn't find an expected temporary file. Does anybody have suggestions?
Many thanks
I checked the idrPlotWrapper.sh file and it just renames the two *.sav files to idrPlot-uri.sav and idrPlot-em.sav prior to running the R script on them.
Running batch-consistency-plot.r manually on the two files gives this cryptic output:
null device 1
but a idrPlot-plot.ps file is actually written. The next step of idrPlotWrapper.sh invokes ps2pdf on it and it works just fine if I run it manually.
Thus it should not be an R problem.
Thx Federico
Il 06/12/13 16:15, Björn Grüning ha scritto:
Hi,
my guess is that some previous steps failed and the assumed tempfile was not created. That can have many different reasons, probably some R dependencies are missing. Try to run the generated commandline from your terminal and catch more error messages.
Cheers, Bjoern
Hi,
recently I installed the idr_package from the Galaxy tool-shed but the tool IDR-plot does not work for my Galaxy instance.
This is the error message:
GPL Ghostscript 8.70: **** Could not open temporary file ./database/tmp/gs_DtCtic **** Unable to open the initial device, quitting. mv: cannot stat `./idrPlot-plot.pdf': No such file or directory
It seems it doesn't find an expected temporary file. Does anybody have suggestions?
Many thanks
galaxy-dev@lists.galaxyproject.org