I checked the idrPlotWrapper.sh file and it just renames the two *.sav
files to idrPlot-uri.sav and idrPlot-em.sav prior to running the R
script on them.
Running batch-consistency-plot.r manually on the two files gives this
but a idrPlot-plot.ps file is actually written. The next step of
idrPlotWrapper.sh invokes ps2pdf on it and it works just fine if I run
Thus it should not be an R problem.
Il 06/12/13 16:15, Björn Grüning ha scritto:
my guess is that some previous steps failed and the assumed tempfile was
not created. That can have many different reasons, probably some R
dependencies are missing. Try to run the generated commandline from your
terminal and catch more error messages.
> recently I installed the idr_package from the Galaxy tool-shed but the
> tool IDR-plot does not work for my Galaxy instance.
> This is the error message:
> GPL Ghostscript 8.70: **** Could not open temporary file
> **** Unable to open the initial device, quitting.
> mv: cannot stat `./idrPlot-plot.pdf': No such file or directory
> It seems it doesn't find an expected temporary file. Does anybody have
> Many thanks
Federico Zambelli, Ph.D.
Bioinformatics, Evolution and Comparative Genomics Lab
Dept. of Biosciences
University of Milano - Italy
What can be asserted without proof can be dismissed without proof.