Re: [galaxy-dev] [galaxy-user] scramble pbs_python egg
Luobin Yang wrote:
Hi,
I am trying to scramble the pbs_python egg for my galaxy installation, when I execute the following command:
"LIBTORQUE_DIR=/usr/local/lib python scripts/scramble.py pbs_python"
I got lots messages like the following:
scramble(): Egg already exists, remove to force rebuild:
/home/galaxy/galaxy-dist/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-i686-ucs4.egg .........
but there is message about pbs_python and there is no pbs_python.egg generated in the eggs directory
Hi Luobin, I've moved this discussion to the galaxy-dev list since it concerns a local installation. Sorry for the delay in response, if you've already resolved this issue please let us know. If not, please try the following: LIBTORQUE_DIR=/usr/local/lib python scripts/scramble.py -e pbs_python And paste the full output here if it fails. Thanks, --nate
Anything wrong?
Thanks, Luobin
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Hi, Nate, Yeah, I've already solved the issue, basically used the -e parameter as you mentioned here. I think the documentation should be corrected. Thanks, Luobin On Tue, Aug 16, 2011 at 12:53 PM, Nate Coraor <nate@bx.psu.edu> wrote:
Luobin Yang wrote:
Hi,
I am trying to scramble the pbs_python egg for my galaxy installation, when I execute the following command:
"LIBTORQUE_DIR=/usr/local/lib python scripts/scramble.py pbs_python"
I got lots messages like the following:
scramble(): Egg already exists, remove to force rebuild:
/home/galaxy/galaxy-dist/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-i686-ucs4.egg
.........
but there is message about pbs_python and there is no pbs_python.egg generated in the eggs directory
Hi Luobin,
I've moved this discussion to the galaxy-dev list since it concerns a local installation. Sorry for the delay in response, if you've already resolved this issue please let us know.
If not, please try the following:
LIBTORQUE_DIR=/usr/local/lib python scripts/scramble.py -e pbs_python
And paste the full output here if it fails.
Thanks, --nate
Anything wrong?
Thanks, Luobin
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Luobin Yang wrote:
Hi, Nate,
Yeah, I've already solved the issue, basically used the -e parameter as you mentioned here. I think the documentation should be corrected.
Thanks, I've fixed the documentation.
Thanks, Luobin
On Tue, Aug 16, 2011 at 12:53 PM, Nate Coraor <nate@bx.psu.edu> wrote:
Luobin Yang wrote:
Hi,
I am trying to scramble the pbs_python egg for my galaxy installation, when I execute the following command:
"LIBTORQUE_DIR=/usr/local/lib python scripts/scramble.py pbs_python"
I got lots messages like the following:
scramble(): Egg already exists, remove to force rebuild:
/home/galaxy/galaxy-dist/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-i686-ucs4.egg
.........
but there is message about pbs_python and there is no pbs_python.egg generated in the eggs directory
Hi Luobin,
I've moved this discussion to the galaxy-dev list since it concerns a local installation. Sorry for the delay in response, if you've already resolved this issue please let us know.
If not, please try the following:
LIBTORQUE_DIR=/usr/local/lib python scripts/scramble.py -e pbs_python
And paste the full output here if it fails.
Thanks, --nate
Anything wrong?
Thanks, Luobin
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
-
Luobin Yang
-
Nate Coraor