It probably happens due to a system installed package conflict. You should probably do it inside a virtual environment: virtualenv --no-site-packages venv source venv/bin/activate cd galaxy-dist sh run.sh That should hopefully solve the problem. On 16 January 2015 at 16:42, Abhishek Pratap <abhishek.vit@gmail.com> wrote:

**Did the following**

hg clone https://bitbucket.org/galaxy/galaxy-dist/ test cd test/ hg update stable

Machine: Mac Yosemite(10.10.1)

**Got the following error**

Some eggs are out of date, attempting to fetch... Fetched http://eggs.galaxyproject.org/bioblend/bioblend-0.4.2-py2.7.egg Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 46, in <module> c.resolve() # Only fetch eggs required by the config File "/Users/apratap/softwares/test/lib/galaxy/eggs/__init__.py", line 347, in resolve egg.resolve() File "/Users/apratap/softwares/test/lib/galaxy/eggs/__init__.py", line 192, in resolve if e.args[1].key != e.args[0].key: IndexError: tuple index out of range Fetch failed.

Traceback (most recent call last): File "./scripts/paster.py", line 33, in <module> serve.run() File "/Users/apratap/softwares/test/lib/galaxy/util/pastescript/serve.py", line 1049, in run invoke(command, command_name, options, args[1:]) File "/Users/apratap/softwares/test/lib/galaxy/util/pastescript/serve.py", line 1055, in invoke exit_code = runner.run(args) File "/Users/apratap/softwares/test/lib/galaxy/util/pastescript/serve.py", line 220, in run result = self.command() File "/Users/apratap/softwares/test/lib/galaxy/util/pastescript/serve.py", line 643, in command app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars) File "/Users/apratap/softwares/test/lib/galaxy/util/pastescript/loadwsgi.py", line 350, in loadapp return loadobj(APP, uri, name=name, **kw) File "/Users/apratap/softwares/test/lib/galaxy/util/pastescript/loadwsgi.py", line 375, in loadobj return context.create() File "/Users/apratap/softwares/test/lib/galaxy/util/pastescript/loadwsgi.py", line 813, in create return self.object_type.invoke(self) File "/Users/apratap/softwares/test/lib/galaxy/util/pastescript/loadwsgi.py", line 249, in invoke return fix_call(context.object, context.global_conf, **context.local_conf) File "/Users/apratap/softwares/test/lib/galaxy/util/pastescript/loadwsgi.py", line 97, in fix_call val = callable(*args, **kw) File "/Users/apratap/softwares/test/lib/galaxy/webapps/galaxy/buildapp.py", line 54, in app_factory webapp.add_ui_controllers( 'galaxy.webapps.galaxy.controllers', app ) File "/Users/apratap/softwares/test/lib/galaxy/web/framework/webapp.py", line 119, in add_ui_controllers module = import_module( module_name ) File "/Users/apratap/softwares/test/lib/galaxy/util/backports/importlib/__init__.py", line 37, in import_module __import__(name) File "/Users/apratap/softwares/test/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py", line 21, in <module> eggs.require('bioblend') File "/Users/apratap/softwares/test/lib/galaxy/eggs/__init__.py", line 411, in require return c[req.project_name].require() File "/Users/apratap/softwares/test/lib/galaxy/eggs/__init__.py", line 239, in require dists = self.resolve() File "/Users/apratap/softwares/test/lib/galaxy/eggs/__init__.py", line 170, in resolve dists = pkg_resources.working_set.resolve( ( self.distribution.as_requirement(), ), env, self.fetch ) File "/Users/apratap/softwares/test/lib/pkg_resources.py", line 569, in resolve raise VersionConflict(dist,req) # XXX put more info here pkg_resources.VersionConflict: (bioblend 0.4.2 (/Users/apratap/softwares/test/eggs/bioblend-0.4.2-py2.7.egg), Requirement.parse('poster')) galaxy.jobs.handler INFO 2015-01-16 16:40:58,095 sending stop signal to worker thread galaxy.jobs.handler INFO 2015-01-16 16:40:58,096 job handler queue stopped galaxy.jobs.runners INFO 2015-01-16 16:40:58,096 LWRRunner: Sending stop signal to monitor thread galaxy.jobs.runners INFO 2015-01-16 16:40:58,096 LWRRunner: Sending stop signal to 3 worker threads galaxy.jobs.runners INFO 2015-01-16 16:40:58,096 LocalRunner: Sending stop signal to 5 worker threads galaxy.jobs.handler INFO 2015-01-16 16:40:58,097 sending stop signal to worker thread galaxy.jobs.handler INFO 2015-01-16 16:40:58,098 job handler stop queue stopped ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

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