selecting multiple inputs for workflows not possible anymore
Hi all, I just found out that I cannot select multiple inputs in workflows anymore in our local Galaxy. This option used to work on these workflows in the past. I only get now a dropdown box, without the little icon at the top of the input list to select multiple inputs. I am a little puzzled of what's wrong. Any light in the dark? I have repeated these steps in a freshly started cloud galaxy instance, updated to the latest release, and imported that workflow. In that instance, I can select multiple files: but it is not anymore with the multiple selection, but in a 'dropdown-checkbox-list' (hope this is clear). The problem is here that only one input gets processed, even the input list contains multiple items. Every item that is checked gets into the inputbox. A second issue is that this entry (already in the input list) is not removed from the checkbox-list: so you can select multiple times the same input. (although this might be wanted in some cases?) Thanks, Joachim -- Joachim Jacob Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
I should have read the rest of my email before replying -- so you did update Galaxy for your cloud instance. What exact revision/branch are you running now? There was a brief period when select2 was enabled for the workflow page and it broke things. This should be fixed in -stable (and, of course, tip of -central). On Thu, May 16, 2013 at 10:12 AM, Joachim Jacob | VIB | < joachim.jacob@vib.be> wrote:
Hi all,
I just found out that I cannot select multiple inputs in workflows anymore in our local Galaxy. This option used to work on these workflows in the past. I only get now a dropdown box, without the little icon at the top of the input list to select multiple inputs.
I am a little puzzled of what's wrong. Any light in the dark?
I have repeated these steps in a freshly started cloud galaxy instance, updated to the latest release, and imported that workflow. In that instance, I can select multiple files: but it is not anymore with the multiple selection, but in a 'dropdown-checkbox-list' (hope this is clear). The problem is here that only one input gets processed, even the input list contains multiple items. Every item that is checked gets into the inputbox. A second issue is that this entry (already in the input list) is not removed from the checkbox-list: so you can select multiple times the same input. (although this might be wanted in some cases?)
Thanks, Joachim
-- Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
______________________________**_____________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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Running the Cloud Galaxy: galaxy@ip-10-39-130-141:/mnt/galaxyTools/galaxy-central$ hg summary parent: 9232:75f09617abaa release_2013.04.01 Merge next-stable to stable for release. branch: stable commit: 2 modified, 9 unknown (new branch head) update: 30 new changesets (update) galaxy@ip-10-39-130-141:/mnt/galaxyTools/galaxy-central$ hg branch stable Our production Galaxy: [galaxy@galaxy galaxy-dist]$ hg summary parent: 9292:2cc8d10988e0 security_2013.04.08 controllers/history: use get_history in switch_to_history branch: stable commit: 4 modified, 267 unknown (new branch head) update: 11 new changesets (update) [galaxy@galaxy galaxy-dist]$ hg branch stable Joachim Jacob Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib On 05/16/2013 04:35 PM, Dannon Baker wrote:
I should have read the rest of my email before replying -- so you did update Galaxy for your cloud instance. What exact revision/branch are you running now? There was a brief period when select2 was enabled for the workflow page and it broke things. This should be fixed in -stable (and, of course, tip of -central).
On Thu, May 16, 2013 at 10:12 AM, Joachim Jacob | VIB | <joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>> wrote:
Hi all,
I just found out that I cannot select multiple inputs in workflows anymore in our local Galaxy. This option used to work on these workflows in the past. I only get now a dropdown box, without the little icon at the top of the input list to select multiple inputs.
I am a little puzzled of what's wrong. Any light in the dark?
I have repeated these steps in a freshly started cloud galaxy instance, updated to the latest release, and imported that workflow. In that instance, I can select multiple files: but it is not anymore with the multiple selection, but in a 'dropdown-checkbox-list' (hope this is clear). The problem is here that only one input gets processed, even the input list contains multiple items. Every item that is checked gets into the inputbox. A second issue is that this entry (already in the input list) is not removed from the checkbox-list: so you can select multiple times the same input. (although this might be wanted in some cases?)
Thanks, Joachim
-- Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34> Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Your instance isn't quite up-to-date enough for the fix -- it's around 9549:47ddf167c9f1 -central / 9452:94caae7433a7 grafted in -stable. On Thu, May 16, 2013 at 10:56 AM, Joachim Jacob | VIB | < joachim.jacob@vib.be> wrote:
Running the Cloud Galaxy:
galaxy@ip-10-39-130-141:/mnt/**galaxyTools/galaxy-central$ hg summary parent: 9232:75f09617abaa release_2013.04.01 Merge next-stable to stable for release. branch: stable commit: 2 modified, 9 unknown (new branch head) update: 30 new changesets (update) galaxy@ip-10-39-130-141:/mnt/**galaxyTools/galaxy-central$ hg branch stable
Our production Galaxy:
[galaxy@galaxy galaxy-dist]$ hg summary parent: 9292:2cc8d10988e0 security_2013.04.08 controllers/history: use get_history in switch_to_history branch: stable commit: 4 modified, 267 unknown (new branch head) update: 11 new changesets (update) [galaxy@galaxy galaxy-dist]$ hg branch stable
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
On 05/16/2013 04:35 PM, Dannon Baker wrote:
I should have read the rest of my email before replying -- so you did update Galaxy for your cloud instance. What exact revision/branch are you running now? There was a brief period when select2 was enabled for the workflow page and it broke things. This should be fixed in -stable (and, of course, tip of -central).
On Thu, May 16, 2013 at 10:12 AM, Joachim Jacob | VIB | < joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>> wrote:
Hi all,
I just found out that I cannot select multiple inputs in workflows anymore in our local Galaxy. This option used to work on these workflows in the past. I only get now a dropdown box, without the little icon at the top of the input list to select multiple inputs.
I am a little puzzled of what's wrong. Any light in the dark?
I have repeated these steps in a freshly started cloud galaxy instance, updated to the latest release, and imported that workflow. In that instance, I can select multiple files: but it is not anymore with the multiple selection, but in a 'dropdown-checkbox-list' (hope this is clear). The problem is here that only one input gets processed, even the input list contains multiple items. Every item that is checked gets into the inputbox. A second issue is that this entry (already in the input list) is not removed from the checkbox-list: so you can select multiple times the same input. (although this might be wanted in some cases?)
Thanks, Joachim
-- Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34>
Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
______________________________**_____________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/**search/mailinglists/<http://galaxyproject.org/search/mailinglists/>
OK. So I believe I can wait for the next stable release then. I assume a do not want to go the default branch. thanks, Joachim Joachim Jacob Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib On 05/16/2013 05:01 PM, Dannon Baker wrote:
Your instance isn't quite up-to-date enough for the fix -- it's around 9549:47ddf167c9f1 -central / 9452:94caae7433a7 grafted in -stable.
On Thu, May 16, 2013 at 10:56 AM, Joachim Jacob | VIB | <joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>> wrote:
Running the Cloud Galaxy:
galaxy@ip-10-39-130-141:/mnt/galaxyTools/galaxy-central$ hg summary parent: 9232:75f09617abaa release_2013.04.01 Merge next-stable to stable for release. branch: stable commit: 2 modified, 9 unknown (new branch head) update: 30 new changesets (update) galaxy@ip-10-39-130-141:/mnt/galaxyTools/galaxy-central$ hg branch stable
Our production Galaxy:
[galaxy@galaxy galaxy-dist]$ hg summary parent: 9292:2cc8d10988e0 security_2013.04.08 controllers/history: use get_history in switch_to_history branch: stable commit: 4 modified, 267 unknown (new branch head) update: 11 new changesets (update) [galaxy@galaxy galaxy-dist]$ hg branch stable
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34> Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
On 05/16/2013 04:35 PM, Dannon Baker wrote:
I should have read the rest of my email before replying -- so you did update Galaxy for your cloud instance. What exact revision/branch are you running now? There was a brief period when select2 was enabled for the workflow page and it broke things. This should be fixed in -stable (and, of course, tip of -central).
On Thu, May 16, 2013 at 10:12 AM, Joachim Jacob | VIB | <joachim.jacob@vib.be <mailto:joachim.jacob@vib.be> <mailto:joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>>> wrote:
Hi all,
I just found out that I cannot select multiple inputs in workflows anymore in our local Galaxy. This option used to work on these workflows in the past. I only get now a dropdown box, without the little icon at the top of the input list to select multiple inputs.
I am a little puzzled of what's wrong. Any light in the dark?
I have repeated these steps in a freshly started cloud galaxy instance, updated to the latest release, and imported that workflow. In that instance, I can select multiple files: but it is not anymore with the multiple selection, but in a 'dropdown-checkbox-list' (hope this is clear). The problem is here that only one input gets processed, even the input list contains multiple items. Every item that is checked gets into the inputbox. A second issue is that this entry (already in the input list) is not removed from the checkbox-list: so you can select multiple times the same input. (although this might be wanted in some cases?)
Thanks, Joachim
-- Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34> <tel:%2B32%209%20244.66.34>
Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Sorry, what I was saying was that you *can* pull these changes without leaving stable using 'hg pull -b stable http://bitbucket.org/galaxy/galaxy-central'. (Actually, if you're already on stable the -b is unnecessary -- you'll get the extra changesets but they won't be activated when you update) On Thu, May 16, 2013 at 11:08 AM, Joachim Jacob | VIB | < joachim.jacob@vib.be> wrote:
OK. So I believe I can wait for the next stable release then. I assume a do not want to go the default branch.
thanks, Joachim
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
On 05/16/2013 05:01 PM, Dannon Baker wrote:
Your instance isn't quite up-to-date enough for the fix -- it's around 9549:47ddf167c9f1 -central / 9452:94caae7433a7 grafted in -stable.
On Thu, May 16, 2013 at 10:56 AM, Joachim Jacob | VIB | < joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>> wrote:
Running the Cloud Galaxy:
galaxy@ip-10-39-130-141:/mnt/**galaxyTools/galaxy-central$ hg summary parent: 9232:75f09617abaa release_2013.04.01 Merge next-stable to stable for release. branch: stable commit: 2 modified, 9 unknown (new branch head) update: 30 new changesets (update) galaxy@ip-10-39-130-141:/mnt/**galaxyTools/galaxy-central$ hg branch stable
Our production Galaxy:
[galaxy@galaxy galaxy-dist]$ hg summary parent: 9292:2cc8d10988e0 security_2013.04.08 controllers/history: use get_history in switch_to_history branch: stable commit: 4 modified, 267 unknown (new branch head) update: 11 new changesets (update) [galaxy@galaxy galaxy-dist]$ hg branch stable
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34> Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
On 05/16/2013 04:35 PM, Dannon Baker wrote:
I should have read the rest of my email before replying -- so you did update Galaxy for your cloud instance. What exact revision/branch are you running now? There was a brief period when select2 was enabled for the workflow page and it broke things. This should be fixed in -stable (and, of course, tip of -central).
On Thu, May 16, 2013 at 10:12 AM, Joachim Jacob | VIB | <joachim.jacob@vib.be <mailto:joachim.jacob@vib.be> <mailto:joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>>**>
wrote:
Hi all,
I just found out that I cannot select multiple inputs in workflows anymore in our local Galaxy. This option used to work on these workflows in the past. I only get now a dropdown box, without the little icon at the top of the input list to select multiple inputs.
I am a little puzzled of what's wrong. Any light in the dark?
I have repeated these steps in a freshly started cloud galaxy instance, updated to the latest release, and imported that workflow. In that instance, I can select multiple files: but it is not anymore with the multiple selection, but in a 'dropdown-checkbox-list' (hope this is clear). The problem is here that only one input gets processed, even the input list contains multiple items. Every item that is checked gets into the inputbox. A second issue is that this entry (already in the input list) is not removed from the checkbox-list: so you can select multiple times the same input. (although this might be wanted in some cases?)
Thanks, Joachim
-- Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34> <tel:%2B32%209%20244.66.34>
Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
______________________________**_____________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/**search/mailinglists/<http://galaxyproject.org/search/mailinglists/>
Allright. I just pulled in all changesets from stable to my cloud Galaxy, restarted, and everything works, at first glance. Thanks for your support! J Joachim Jacob Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib On 05/16/2013 05:21 PM, Dannon Baker wrote:
Sorry, what I was saying was that you *can* pull these changes without leaving stable using 'hg pull -b stable http://bitbucket.org/galaxy/galaxy-central'. (Actually, if you're already on stable the -b is unnecessary -- you'll get the extra changesets but they won't be activated when you update)
On Thu, May 16, 2013 at 11:08 AM, Joachim Jacob | VIB | <joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>> wrote:
OK. So I believe I can wait for the next stable release then. I assume a do not want to go the default branch.
thanks, Joachim
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34> Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
On 05/16/2013 05:01 PM, Dannon Baker wrote:
Your instance isn't quite up-to-date enough for the fix -- it's around 9549:47ddf167c9f1 -central / 9452:94caae7433a7 grafted in -stable.
On Thu, May 16, 2013 at 10:56 AM, Joachim Jacob | VIB | <joachim.jacob@vib.be <mailto:joachim.jacob@vib.be> <mailto:joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>>> wrote:
Running the Cloud Galaxy:
galaxy@ip-10-39-130-141:/mnt/galaxyTools/galaxy-central$ hg summary parent: 9232:75f09617abaa release_2013.04.01 Merge next-stable to stable for release. branch: stable commit: 2 modified, 9 unknown (new branch head) update: 30 new changesets (update) galaxy@ip-10-39-130-141:/mnt/galaxyTools/galaxy-central$ hg branch stable
Our production Galaxy:
[galaxy@galaxy galaxy-dist]$ hg summary parent: 9292:2cc8d10988e0 security_2013.04.08 controllers/history: use get_history in switch_to_history branch: stable commit: 4 modified, 267 unknown (new branch head) update: 11 new changesets (update) [galaxy@galaxy galaxy-dist]$ hg branch stable
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34> <tel:%2B32%209%20244.66.34> Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
On 05/16/2013 04:35 PM, Dannon Baker wrote:
I should have read the rest of my email before replying -- so you did update Galaxy for your cloud instance. What exact revision/branch are you running now? There was a brief period when select2 was enabled for the workflow page and it broke things. This should be fixed in -stable (and, of course, tip of -central).
On Thu, May 16, 2013 at 10:12 AM, Joachim Jacob | VIB | <joachim.jacob@vib.be <mailto:joachim.jacob@vib.be> <mailto:joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>> <mailto:joachim.jacob@vib.be <mailto:joachim.jacob@vib.be> <mailto:joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>>>>
wrote:
Hi all,
I just found out that I cannot select multiple inputs in workflows anymore in our local Galaxy. This option used to work on these workflows in the past. I only get now a dropdown box, without the little icon at the top of the input list to select multiple inputs.
I am a little puzzled of what's wrong. Any light in the dark?
I have repeated these steps in a freshly started cloud galaxy instance, updated to the latest release, and imported that workflow. In that instance, I can select multiple files: but it is not anymore with the multiple selection, but in a 'dropdown-checkbox-list' (hope this is clear). The problem is here that only one input gets processed, even the input list contains multiple items. Every item that is checked gets into the inputbox. A second issue is that this entry (already in the input list) is not removed from the checkbox-list: so you can select multiple times the same input. (although this might be wanted in some cases?)
Thanks, Joachim
-- Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34> <tel:%2B32%209%20244.66.34> <tel:%2B32%209%20244.66.34>
Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
-
Dannon Baker -
Joachim Jacob | VIB |