If there are any limits, it would be down to the Galaxy Admin's job settings - something generic with collections.

Personally I've not done this - I tend to concatenate FASTA files to make large files with multiple sequences instead.

(And then we have the optional task splitting enabled so that Galaxy breaks up the multiple-sequence FASTA file into chunks which get shared out on our cluster for better throughput before concatenating the output back into a single file.)

Peter On Thu, Aug 30, 2018 at 3:37 PM Jochen Bick jochen.bick@usys.ethz.ch wrote:

Hi,

is there any limit to run BLAST jobs from a collection of single FASTA files? I started a job but is does not get executed... its just sending for about an hour.

Cheers Jochen

-- ETH Zurich *Jochen Bick* Animal Physiology Institute of Agricultural Sciences Postal address: Universitätstrasse 2 / LFW B 58.1 Office: Tannenstrasse 1 / TAN D 6.2 8092 Zurich, Switzerland

Phone +41 44 632 28 25 jochen.bick@usys.ethz.ch mailto:jochen.bick@usys.ethz.ch www.ap.ethz.ch ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/